BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0173.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 228 5e-61 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 199 2e-52 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 197 7e-52 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 194 7e-51 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 133 2e-32 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 228 bits (581), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 136/332 (40%), Positives = 195/332 (58%), Gaps = 30/332 (9%) Query: 4 VALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGM-------- 55 V L + G+ LD+SGP+ V A NR L ++ Y L VV + ++ S G+ Sbjct: 10 VVFLAYAGMNLLDLSGPMQVLATTNR-LQGREVYRLHVVSAQGGTILTSAGLPVGTQSLQ 68 Query: 56 ------QIVPHLHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICN 109 Q P LH L++ GG Q DA L W+ + AQ A R S+C Sbjct: 69 EMDRLLQATPDLHT---------LISPGGSSGDQFPLDAALVAWIRQHAQAAVRICSVCT 119 Query: 110 GAFLLAHAGLLNGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLS 169 GAF LA AG+L+G RVTTHW+ A L R +P ++VDAD IY+R G++ TSAGVTAGIDL+ Sbjct: 120 GAFHLAEAGVLDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLA 179 Query: 170 LALLAEDAGQEVALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVG---QVQHYVREH 226 LAL+ +D G A+ A++LV+F++R GGQSQFS TP A +++ G ++ ++ H Sbjct: 180 LALVEQDLGHASAIATARQLVMFIKRPGGQSQFS---TPLATQSTGAGRFAELHAWIAAH 236 Query: 227 LQEKLSVDVLAKVVSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVA 286 L + L V+ LA SPR FAR++ + TPA +E R++AAR LE + PLK +A Sbjct: 237 LADDLHVENLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIA 296 Query: 287 YRCGFRDASHMRVVFQRRLGISAQQYRDNFSA 318 + G+ + ++R VF R+LG+S QYR+ F+A Sbjct: 297 SQAGYGEEQNLRRVFLRQLGVSPGQYRERFAA 328 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 199 bits (507), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/313 (37%), Positives = 174/313 (55%), Gaps = 4/313 (1%) Query: 3 TVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPHLH 62 TV + F G + LD+ GP+ VF+ A L Y L V A + + + + + Sbjct: 19 TVVFIAFDGAEPLDLMGPIGVFSRAEE--LAPGSYALRVASVDGALLRTRSPLSLAGIVP 76 Query: 63 YSAARENYDLLLAAGG--PGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLL 120 S+ D +L AGG + Q + L +WL ++A R GSIC GAF+L AGLL Sbjct: 77 LSSIEGRLDTVLVAGGHEQAIHQAATEVALVEWLNRRGRQARRIGSICTGAFVLGAAGLL 136 Query: 121 NGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQE 180 +G+ VTTHW L + FP+ +VD D IY DG + TSAGVT GIDL+LAL+ +D GQE Sbjct: 137 DGRYVTTHWAAVDLLQQYFPKAKVDPDAIYRIDGPICTSAGVTTGIDLALALVRDDLGQE 196 Query: 181 VALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVV 240 +A +A+ LV+F+ R G Q Q S L L + ++ +H QE +SV+ LA+ Sbjct: 197 IASAIARDLVLFLHRPGRQQQISATLVAQQSAGDLFSALLVWMLDHPQEDMSVNALAERA 256 Query: 241 SSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVV 300 + SPRNFAR F R+ P +++ R+D A LE + ++ +A R G ++A + V Sbjct: 257 AMSPRNFARRFLREVGKPPGQYVLELRIDHACRHLEKTGWSIERIAERSGLKNADTLHRV 316 Query: 301 FQRRLGISAQQYR 313 F++ LG++ QYR Sbjct: 317 FRQHLGMTPAQYR 329 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 197 bits (502), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/319 (42%), Positives = 179/319 (56%), Gaps = 15/319 (4%) Query: 1 MP--TVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIV 58 MP A L+F LD +GPL F ANR L + Y L++ + S G I Sbjct: 1 MPLRETAFLIFADCSMLDFTGPLSAFDAANR-LAGKTLYRLTLYSEPGGMIRSSAGALIH 59 Query: 59 PHLHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAE----AAQRAGRHGSICNGAFLL 114 R ++D L+ AGG G P R+ L+S L AA R+ R IC GAF+L Sbjct: 60 TE---RIGRTSFDTLIVAGG-GAP---REGLVSPALRRHVLRAAARSRRIAGICTGAFVL 112 Query: 115 AHAGLLNGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLA 174 A GLL+GKR TTHW AA L + P V+VD+DRIY RDG + TSAG++AGIDL+LAL+ Sbjct: 113 AATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIE 172 Query: 175 EDAGQEVALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVD 234 +D G E+A +VA+ LVV+ +R GGQSQFS L + + + + REHL + L+VD Sbjct: 173 DDHGVELARSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLHQALTVD 231 Query: 235 VLAKVVSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDA 294 +LA+V S R F R FA + TPA IE R +AAR+ +E S L+++A GF DA Sbjct: 232 LLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDA 291 Query: 295 SHMRVVFQRRLGISAQQYR 313 MR R G Q R Sbjct: 292 DRMRRACLRLFGQPPQAMR 310 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 194 bits (494), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 5/313 (1%) Query: 1 MPTVALLVFPGVQALDVSGPLDVFAEANRFLLPQQHYHLSVVGSTHAPVVCSNGMQIVPH 60 M V L+ G Q + ++ VF AN+ + + Y L + S GM++ Sbjct: 1 MHHVGYLLTEGFQVMGLA-TQAVFEYANK-VAGHEFYRLHNYSVGGGELASSLGMRVTTA 58 Query: 61 LHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAGLL 120 + A + ++ G P + A +L AA++A R IC G F+LA AGLL Sbjct: 59 KAAATASIDTWVVCGVGNP--LESPASAEECAFLQRAAKKARRIAGICTGGFVLAEAGLL 116 Query: 121 NGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAGQE 180 +R TTHW A A+ FP+++V+ DRIY+ DG L TSAG+TAG+DL+LA++ +D G+E Sbjct: 117 ARRRATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEE 176 Query: 181 VALNVAKRLVVFMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSVDVLAKVV 240 A +VA++LV+ R+GGQSQ S L A +T + +Y R +L+ L+V+ LA+ Sbjct: 177 AARSVARKLVMHQHRAGGQSQHSEML-ELAPKTDRIQDALNYARRNLKRALTVEELAEQA 235 Query: 241 SSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRDASHMRVV 300 + S R F RVF + +PA+ IEG R++AAR+M+E S PL+ VA GFRD HMR V Sbjct: 236 NLSARQFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREV 295 Query: 301 FQRRLGISAQQYR 313 F R G++ Q R Sbjct: 296 FLRGFGVAPQSMR 308 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 157/325 (48%), Gaps = 13/325 (4%) Query: 4 VALLVFPGVQALDVSGPLDVFAEANRFLLPQ----QHYHLSVVGSTHAPVVCSNGMQI-V 58 + ++V GV D++ +VF ++ L YH S++ + S+ +QI Sbjct: 36 IGVIVSEGVILADLAEIAEVFFVTDKMLSSMFSQGNGYHFSLLSVRGGMITTSSSVQIGT 95 Query: 59 PHLHYSAARENYDLLLAAGGPGLPQQERDALLSDWLAEAAQRAGRHGSICNGAFLLAHAG 118 L + R +D ++ A G G D L +WLA AA A R ++C G +LA AG Sbjct: 96 LSLQHHDIRA-FDSIIIADGRGNFADCNDPQLLNWLATAALHAPRIAALCTGVLVLAEAG 154 Query: 119 LLNGKRVTTHWNDAAALARDFPEVEVDADRIYLRDGKLVTSAGVTAGIDLSLALLAEDAG 178 LL+ K+V HW L R+FP++ V+ ++D + TSA G +++LAL+ +D G Sbjct: 155 LLDRKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSADSGTGAEVALALIEDDLG 214 Query: 179 QEVALNVAKRLVV-----FMQRSGGQSQFSPYLTPYAEETSLVGQVQHYVREHLQEKLSV 233 A + + L V F S+ P + E + + ++ EH+ +++ Sbjct: 215 SSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRSER--IQKALIWLDEHMSSSINM 272 Query: 234 DVLAKVVSSSPRNFARVFARDARMTPAEFIEGARVDAARVMLESSAAPLKTVAYRCGFRD 293 A VS S RNF R F R+ TP F+ R++AA + L+ + P++ +A RCG Sbjct: 273 SEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKETDLPIEKIARRCGLVS 332 Query: 294 ASHMRVVFQRRLGISAQQYRDNFSA 318 H+ +F++ G+S +YR +A Sbjct: 333 GEHLARLFRKHHGVSPGEYRKKENA 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 982,107 Number of extensions: 39791 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 7 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)