BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0170.p (612 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314056|ref|YP_003778148.1| ABC transporter permease and AT... 778 0.0 gi|300312125|ref|YP_003776217.1| ABC transporter permease and AT... 355 6e-99 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 80 5e-16 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 77 5e-15 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 75 1e-14 >gi|300314056|ref|YP_003778148.1| ABC transporter permease and ATPase components protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/578 (64%), Positives = 455/578 (78%), Gaps = 5/578 (0%) Query: 21 VSNSSGKSMTANKKNADATS--FNRRAVWRLVKPYWISEERWKAWSLLALIIALVLVMVY 78 +++ KS T +A T +R +W L++P+W+SEE+WKAW+LL IIAL L MVY Sbjct: 1 MTDPHAKSATPPSPHALDTPNRASRAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVY 60 Query: 79 INVLLTDWNRTMYDSLQNKDYTAFKSLLWQFSYLAFAYIVVATARIYLTQSLQIRWRTWM 138 INV L WNR MYD LQ++DY FK+LLWQFS+LAF ++ +A +YL Q+LQIRWR WM Sbjct: 61 INVRLNSWNRDMYDVLQSRDYAQFKALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWM 120 Query: 139 TDKYMGRWLEHHAYYRMEQG---RIADNPDQRIAEDLRSLTSNTISLVLGFISSLVTLVS 195 + +Y+ RWL H AYYR+EQG R++DNPDQRIAEDL++LTS+T+SLVLGFISS VTL S Sbjct: 121 SQRYLDRWLAHRAYYRIEQGQQGRLSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFS 180 Query: 196 FVGILWAISGPLSFAFMQYDWVIPGYMVWFAIAYAGVGSWIIWWIGKPLVVQSYNQERFE 255 F+ ILWA+SGPL+F+ + WVIPGYMVWF IAYA VGS ++WWIG+PLV S++QERFE Sbjct: 181 FIHILWAVSGPLTFSALGQSWVIPGYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFE 240 Query: 256 ANYRFGLIRIREHAEAIALYRGERRERDELNLRFEDIRRNWWDIMRTTKSLNIASNFYGQ 315 AN+RFGLIR+REHAEA+ALYRGE +E +L R +DIRRNWW+IMR TK LN+A NFYGQ Sbjct: 241 ANFRFGLIRVREHAEAVALYRGEPQEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQ 300 Query: 316 FAIIFPMLVAAPRYFSGAMSLGVLMQLSSAFGQVQDALSWFINAFTTLADWKASINRLAG 375 FA+IFPMLV+APRYFSGA+SLGVLMQ+S+AFGQVQDALSWFINAFTTLA WKASINRLAG Sbjct: 301 FAVIFPMLVSAPRYFSGAISLGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAG 360 Query: 376 FNLAVEQAQKQPASISVARNNVGAILLDKLDLALPDGRTLIGSVNSAIHPGERILVSGPS 435 FN VE+A P I VA + A+ L L L+ PDG ++ ++++ + GE +L+SGPS Sbjct: 361 FNADVERAAGMPRHIDVAPHAGSAVTLQGLQLSFPDGAPMMHALDARVESGEHVLISGPS 420 Query: 436 GCGKSTLFRAIAGIWPYGGGDIQIPHKAKLMFVPQSSYLPIGTLRSVLAYPADESAYTDL 495 GCGKSTL RA+A IWPYG G IQ+P A MF+PQ SYLPIGTLR+ L+YPA E ++ D Sbjct: 421 GCGKSTLMRAMADIWPYGQGRIQLPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDA 480 Query: 496 AICHYLELCRLPHLKDQLDVYNNWGNRLSPGEQQRLAFARVFLTRPEVVFLDEASSAMDG 555 I YL LCRL HL D+LDV NW + LSPGEQQRLAF RVFL RP +VFLDEASSAMDG Sbjct: 481 LITRYLGLCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDG 540 Query: 556 ETEEALYALLQQELPAAAVVSIAHRETVARYHQQRWHF 593 +TEE LYA L +ELP V+SIAHRET+AR+H RWHF Sbjct: 541 QTEEVLYAALPRELPGVTVISIAHRETLARFHDVRWHF 578 >gi|300312125|ref|YP_003776217.1| ABC transporter permease and ATPase components protein [Herbaspirillum seropedicae SmR1] Length = 594 Score = 355 bits (911), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 197/547 (36%), Positives = 297/547 (54%) Query: 43 RRAVWRLVKPYWISEERWKAWSLLALIIALVLVMVYINVLLTDWNRTMYDSLQNKDYTAF 102 R + W L K YW S E + L A I+ V VY ++ + W YD++ + + Sbjct: 23 RTSTWWLFKSYWTSREAPVSALLAAFIVGSGFVGVYFSLRVNQWTGKFYDAIGSGRFGTI 82 Query: 103 KSLLWQFSYLAFAYIVVATARIYLTQSLQIRWRTWMTDKYMGRWLEHHAYYRMEQGRIAD 162 +LL F L +A + L++RWRTW+T + +W AY+R+E+ ++ D Sbjct: 83 PALLTLFLGLIMVAATLAISASVAADVLKLRWRTWLTTTLIDQWTRSGAYFRIERDKLLD 142 Query: 163 NPDQRIAEDLRSLTSNTISLVLGFISSLVTLVSFVGILWAISGPLSFAFMQYDWVIPGYM 222 N DQRI+ED++ T+++ I V+ V+F +LW +SG IP YM Sbjct: 143 NADQRISEDVKLFVDYTVTITSHLIHVPVSAVTFSIVLWELSGNYLLELGHLAITIPAYM 202 Query: 223 VWFAIAYAGVGSWIIWWIGKPLVVQSYNQERFEANYRFGLIRIREHAEAIALYRGERRER 282 ++ Y+G + +G+ L+ + Q++ EA++R +++IRE AE IA Y G E Sbjct: 203 LFAVYLYSGSTLLLTHLLGRSLIPVNIRQQKVEADFRALMVQIREGAEQIAFYDGASVEA 262 Query: 283 DELNLRFEDIRRNWWDIMRTTKSLNIASNFYGQFAIIFPMLVAAPRYFSGAMSLGVLMQL 342 L F IR N W I+R T + GQ + I P+L+ P+ +G M+LG +M++ Sbjct: 263 SRLRSTFASIRANTWRIIRVTAQVMFGVQVPGQISSILPVLLVLPQLMAGTMTLGGMMRV 322 Query: 343 SSAFGQVQDALSWFINAFTTLADWKASINRLAGFNLAVEQAQKQPASISVARNNVGAILL 402 S+AFG V L++F A+ + A W+A + RL A E + R I + Sbjct: 323 SAAFGSVSSTLAYFPQAYQSFAAWRAVVRRLLALLDANEIKSPTFELTVLQRPQQTTIEV 382 Query: 403 DKLDLALPDGRTLIGSVNSAIHPGERILVSGPSGCGKSTLFRAIAGIWPYGGGDIQIPHK 462 L L P G L ++ G R L+ G SG GKSTL RA+AGIWP+G G I +P + Sbjct: 383 GALTLTDPHGNPLSRIPAFSVKHGARCLIRGRSGSGKSTLLRALAGIWPFGIGSITVPAR 442 Query: 463 AKLMFVPQSSYLPIGTLRSVLAYPADESAYTDLAICHYLELCRLPHLKDQLDVYNNWGNR 522 +MFVPQ SY+P+G+LR LAYP E+ +D L L LD + WG R Sbjct: 443 TSMMFVPQKSYVPVGSLRQALAYPGAETDVSDALAQDILAAVGLAQFLPLLDQPDRWGGR 502 Query: 523 LSPGEQQRLAFARVFLTRPEVVFLDEASSAMDGETEEALYALLQQELPAAAVVSIAHRET 582 LS GEQQRLAFAR+ + RP+ +F+DEA+SA+D E+E+ +Y+LL + LP + ++S+AHR+ Sbjct: 503 LSGGEQQRLAFARILIARPDHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVAHRKE 562 Query: 583 VARYHQQ 589 VA +H Q Sbjct: 563 VAAFHDQ 569 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 112/429 (26%), Positives = 188/429 (43%), Gaps = 59/429 (13%) Query: 187 ISSLV--TLVSFVGILWAISGPLSFAFMQYDWVIPGYMVWFAIAYAG-VGSWIIWWIG-- 241 +SSLV TL S + L I+ L++ YD VWF++ AG + +I++ I Sbjct: 152 VSSLVSYTLFSILPTLIEIALVLAYLITHYD-------VWFSVITAGALVCYILFTITVT 204 Query: 242 --KPLVVQSYNQERFEANYRFGLIRIREHAEAIALYRGERRERDELNLRFEDIRRNWWDI 299 + ++ N+ AN R I + E + + E E + E ++R Sbjct: 205 EWRTHFRRTMNELDSHANTR--AIDSLLNYETVKYFGNEEFEARRYD---EGLQRYERAA 259 Query: 300 MRTTKSLNIASNFYGQFAIIFPMLV-----AAPRYFSGAMSLGVLMQLSSAFGQVQDALS 354 +++ SL++ + GQ AII + A G+M+LG ++ +++ Q+ L+ Sbjct: 260 VKSQSSLSLLNT--GQSAIIAIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLN 317 Query: 355 WFINAFTTLADWKASINRLAGFNLAVEQAQKQPASISVARNNVGAIL-LDKLDLALPDGR 413 + + + A + RL F+L E + ++ + GA L D +D + R Sbjct: 318 FLGVLYREIKQSLADMERL--FSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYERNR 375 Query: 414 TLIGSVNSAIHPGERILVSGPSGCGKSTLFRAI-------AGIWPYGGGDIQIPHKAKLM 466 ++ V+ + G V G SG GKSTL R + AG G D++ +A L Sbjct: 376 QILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLR 435 Query: 467 ----FVPQSSYLPIGTLRSVLAY-----------PADESAYTDLAICHYLELCRLPHLKD 511 VPQ + L T+ +AY A ++AY I ++E LP Sbjct: 436 QAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAY----IHDFIE--SLP--DG 487 Query: 512 QLDVYNNWGNRLSPGEQQRLAFARVFLTRPEVVFLDEASSAMDGETEEALYALLQQELPA 571 + G +LS GE+QR+A AR L P ++ DEA+SA+D E+A+ L++ Sbjct: 488 YASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARE 547 Query: 572 AAVVSIAHR 580 + IAHR Sbjct: 548 RTTLVIAHR 556 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 18/189 (9%) Query: 413 RTLIGSVNSAIHPGERILVSGPSGCGKSTLFRAIAGIWPYGGGDIQI-----------PH 461 R +I +++ +I PGE I + G SG GKST+ I + G I+I + Sbjct: 517 RAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEY 576 Query: 462 KAKLMFVPQSSYLPIGTLRSVLAYPADESAYTDLAICHYLE-----LCRLPHLKDQLDVY 516 + + V Q +L GT+ +AY E+ ++ + RLP D L Sbjct: 577 RRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSL--V 634 Query: 517 NNWGNRLSPGEQQRLAFARVFLTRPEVVFLDEASSAMDGETEEALYALLQQELPAAAVVS 576 G LS GE+QR++ AR L P ++ LDEA+S++D TE+ + L + ++ Sbjct: 635 GERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIA 694 Query: 577 IAHRETVAR 585 IAHR + R Sbjct: 695 IAHRLSTLR 703 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 124/273 (45%), Gaps = 30/273 (10%) Query: 334 MSLGVLMQLSSAFGQVQDALSWFINAFTTLADWKASINRLAGFNLAVEQAQKQPAS--IS 391 MS+G L+ + GQV + + S++RLA V A+ + A Sbjct: 414 MSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLAD----VLDARTEVAGNRTR 469 Query: 392 VARNNVGAILLDKLDLAL-PDGRTLIGSVNSAIHPGERILVSGPSGCGKSTLFRAI---- 446 + R N GAI D + P+ +I ++ I PGE I + G SG GKSTL + + Sbjct: 470 LPRVN-GAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLY 528 Query: 447 ---AGIWPYGGGDIQIPHKAKLM----FVPQSSYLPIGTLRSVLAYPADESAYTD----- 494 G G DI I A L V Q + L ++R +A AD S + Sbjct: 529 ICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIAL-ADPSTPIEQIIEA 587 Query: 495 --LAICHYLELCRLPHLKDQLDVYNNWGNRLSPGEQQRLAFARVFLTRPEVVFLDEASSA 552 LA H +C LP D + G+ LS G++QR+A AR +T P ++ DEA+SA Sbjct: 588 AKLAGAHDF-ICELPEGYDTM--VGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSA 644 Query: 553 MDGETEEALYALLQQELPAAAVVSIAHRETVAR 585 +D E+E+ + ++Q V+ IAHR + R Sbjct: 645 LDYESEKIIQDNMRQICAGRTVLIIAHRLSAVR 677 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,860,323 Number of extensions: 75179 Number of successful extensions: 611 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 595 Number of HSP's successfully gapped: 32 Length of query: 612 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 521 Effective length of database: 1,188,985 Effective search space: 619461185 Effective search space used: 619461185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)