BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0167.p (513 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 602 e-173 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 516 e-147 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 475 e-135 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 449 e-127 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 449 e-127 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 602 bits (1553), Expect = e-173, Method: Compositional matrix adjust. Identities = 327/512 (63%), Positives = 397/512 (77%) Query: 1 MKNLKIGTRLGIGFVVILMLMVVMLGISVWRLHQINSAVVAITSDSVTNERNAVEWLAVI 60 MKNLKIG RL IGF+ +LMLM VM+ + VWRL I A +T ++ ER+AV+W A I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 RESGIRTLAVIKTEDPDAQQYFTAQIAAESARIAPMRKKIEEVNTSPQEVAQLAEINKVR 120 +E+G+RT AV+K++D Q YF QI A+SARI+ ++K++E T +E E+ K+R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 DTYQAVRNDVFKLKKTGNMDEVKKMTAEKFMPLYASYTEAVAKFRDMQRQEITTSAAAIA 180 Y+A R +F +K G+ ++MT + + Y + V ++ D Q+Q I +AAAI Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 NDYSSSRNMLLILGIVELVLGGTLAWLLTISITRPLTQAVGIAETVAAGDLSSDIVAGGK 240 DY S R+MLL LG +E+VLG LAWLLT SITRPL QAV IAETVAAGDL+S I + + Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DETGQLLTALKTMNDNLLNIVSQVRVGTDTISTASSEIASGNLDLSSRTEQQAGSLEETA 300 DETG+LL ALKTMN NLL+IV +VR+GT+TI+TAS EIA+GNLDLS+RTE QAGSLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 301 SAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDIIS 360 SAME+LTSTVKQNADNARQAN+LA SAS+VA QGGAVV QVV TMG+I+ SS+KI DII Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSVS 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 421 KVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDESTQQ 480 KVD GS+LV +AG TM EVV SV RVT +V EI+ ASQEQS GI +V AIT +DE+TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 481 NAALVEQAAAAAQSLQDQAGRLAKVVSVFKLD 512 NAALVEQAAAAA+S+QDQA L VSVF+L+ Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 516 bits (1329), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/509 (57%), Positives = 376/509 (73%) Query: 3 NLKIGTRLGIGFVVILMLMVVMLGISVWRLHQINSAVVAITSDSVTNERNAVEWLAVIRE 62 N+ IG RL +GF +IL +++ GI +WRL + A + ++ + ER +W + Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 SGIRTLAVIKTEDPDAQQYFTAQIAAESARIAPMRKKIEEVNTSPQEVAQLAEINKVRDT 122 RT+A+ K+ DP YF A++AA S +K++E + ++P+E A +I ++R Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 YQAVRNDVFKLKKTGNMDEVKKMTAEKFMPLYASYTEAVAKFRDMQRQEITTSAAAIAND 182 Y + R+++ K K GN +E ++ + F+P +Y + + K D QR+E+ +A I Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 YSSSRNMLLILGIVELVLGGTLAWLLTISITRPLTQAVGIAETVAAGDLSSDIVAGGKDE 242 + SR ++L+L + L+LG A LT+ IT+PL +AV ++ VA GDLSS+I +DE Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDE 245 Query: 243 TGQLLTALKTMNDNLLNIVSQVRVGTDTISTASSEIASGNLDLSSRTEQQAGSLEETASA 302 TGQLL +LK MN +L IVS VR GTDTISTASSEIA+GNLDLSSRTEQQA SL ETASA Sbjct: 246 TGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASA 305 Query: 303 MEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDIISVI 362 MEEL STV+QNADNARQA+QLA SAS VA QGG VVSQVVDTMG+IN SSRKIVDIISVI Sbjct: 306 MEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVI 365 Query: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSVSKV 422 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS++AAKEIK LI+DSV KV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKV 425 Query: 423 DVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDESTQQNA 482 D GS+LV+QAG TM EVV+SV+RVTDIV EIS+AS EQ+ GI ++ AITQMD+ TQQNA Sbjct: 426 DDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNA 485 Query: 483 ALVEQAAAAAQSLQDQAGRLAKVVSVFKL 511 ALVE+AAAAA S+Q QAGRL ++VSVF+L Sbjct: 486 ALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 475 bits (1222), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/512 (58%), Positives = 364/512 (71%), Gaps = 3/512 (0%) Query: 3 NLKIGTRLGIGFVVILMLMVVMLGISVWRLHQINSAVVAITSDSVTNERNAVEWLAVIRE 62 N+KIG RL +GF VIL V++ +S+WRL I +A + + +T ER +W I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 SGIRTLAVIKTEDPDAQQYFTAQIAAESARIAPMRKKIEEVNTSPQEVAQLAEINKVRDT 122 S RT A+ K+ DP +F AA S +K IE + S QE A ++ +VR Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YQAVRNDVFKLKKTGNMDEVKKMTAEKFMPLYASYTEAVAKFRDMQRQEITTSAAAIAND 182 Y R+ + K K G +E ++ A F Y + + + +QR I AA I Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YSSSRNMLLILGIVELVLGGTLAWLLTISITRPLTQAVGIAETVAAGDLSSDI---VAGG 239 Y SRN++L L +++VLG A L + ITRPL QAV +AE VAAGDL+ I +A Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 240 KDETGQLLTALKTMNDNLLNIVSQVRVGTDTISTASSEIASGNLDLSSRTEQQAGSLEET 299 DETG+L+ AL M NL IV QVR GTD I+TAS EIA+GNLDLS+RTE+QAG+LEET Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEET 305 Query: 300 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 359 ASAMEELTSTV QNADNARQANQLA SAS VA QGG VVSQV+ TMGSINESSRKIVDII Sbjct: 306 ASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDII 365 Query: 360 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 419 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AAKEIK LIDDSV Sbjct: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSV 425 Query: 420 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDESTQ 479 +KV GS+LV +AG+TMDEVVASV++V DIV EIS+AS EQS GI +V AIT MD++TQ Sbjct: 426 AKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQ 485 Query: 480 QNAALVEQAAAAAQSLQDQAGRLAKVVSVFKL 511 QNAALVE+AAAAA+++Q+QA RL++VVS FKL Sbjct: 486 QNAALVEEAAAAAEAMQEQAARLSEVVSQFKL 517 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust. Identities = 271/521 (52%), Positives = 358/521 (68%), Gaps = 15/521 (2%) Query: 1 MKNLKIGTRLGIGFVVILMLMVVMLGISVWRLHQINSAVVAITSDSVTNERN-AVEWLAV 59 KNLK+ RL F I+ L+ V+ + +++ IN A+ D + N+R V W Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAI-----DQIVNDRYLKVRWAFD 59 Query: 60 IRE------SGIRTLAV-IKTEDPDAQQYFTAQIAAESARIAPMRKKIEEVNTSPQEVAQ 112 +R+ +R +A+ I+ + +++ ++A + + A + +V Q+ A+ Sbjct: 60 LRDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAK 119 Query: 113 LAEINKVRDTYQAVRNDVFKLKKTGNMDEVKKMTAEKFMPLYASYTEAVAKFRDMQRQEI 172 +++ R + A + D L K GN + K +Y F D Q ++ Sbjct: 120 --ALDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQL 177 Query: 173 TTSAAAIANDYSSSRNMLLILGIVELVLGGTLAWLLTISITRPLTQAVGIAETVAAGDLS 232 A D + + + L + ++ L +L+ SI +PLT+AV +AE VAAGDL+ Sbjct: 178 QAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLT 237 Query: 233 SDIVAGGKDETGQLLTALKTMNDNLLNIVSQVRVGTDTISTASSEIASGNLDLSSRTEQQ 292 + I +DETGQL+ AL+ MNDNL+ IVS VR GT++I+TAS EIASGNLDLS+RTEQQ Sbjct: 238 TRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQ 297 Query: 293 AGSLEETASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESS 352 AGSLEETASAMEE+TSTV+QNADNARQANQ+AVSASE+A+QGG +V +VV TM IN+SS Sbjct: 298 AGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSS 357 Query: 353 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIK 412 RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+AAAKEIK Sbjct: 358 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK 417 Query: 413 TLIDDSVSKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAIT 472 LI DSV KV+ GS LV QAGATM++VV+SV+ VTDIV EIS+AS EQS+GI E+ +A+T Sbjct: 418 ALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVT 477 Query: 473 QMDESTQQNAALVEQAAAAAQSLQDQAGRLAKVVSVFKLDR 513 QMDE TQQNAALVEQAAAAA+S+Q+QA RL + +S+FKL++ Sbjct: 478 QMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust. Identities = 286/516 (55%), Positives = 367/516 (71%), Gaps = 10/516 (1%) Query: 1 MKNLKIGTRLGIGFVVILMLMVVMLGISVWRLHQINSAVVAITSDSVTNERNAVEWLAV- 59 + ++KI RLG F ++++M V+ G+ V L ++ A +D + N+R L Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDA-----TDEIVNDRYVKVALGTQ 58 Query: 60 IRE---SGIRTLA-VIKTEDPDAQQYFTAQIAAESARIAPMRKKIEEVNTSPQEVAQLAE 115 I + +G R+L I +P+ Q+ + ++ +++++ ++E+ +P+ LA Sbjct: 59 ITDKVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAA 118 Query: 116 INKVRDTYQAVRNDVFKLKKTGNMDEVKKMTAEKFMPLYASYTEAVAKFRDMQRQEITTS 175 + + R Y R V L DE +K +P+ Y AV + Q + S Sbjct: 119 LKQARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKS 178 Query: 176 AAAIANDYSSSRNMLLILGIVELVLGGTLAWLLTISITRPLTQAVGIAETVAAGDLSSDI 235 A + SS+ N++L+L V ++L A L+T SITRPL +AV +A VAAGDL+ I Sbjct: 179 AERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQI 238 Query: 236 VAGGKDETGQLLTALKTMNDNLLNIVSQVRVGTDTISTASSEIASGNLDLSSRTEQQAGS 295 A KDETG LL ALK+MNDNL IV++VR GTDTI+TAS EIA+GNLDLSSRTEQQAG+ Sbjct: 239 EATSKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGA 298 Query: 296 LEETASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKI 355 LEETASAMEELTSTV+QNADNARQAN LA +AS+VAIQGG+VV +VV TMG IN++SRKI Sbjct: 299 LEETASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKI 358 Query: 356 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLI 415 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS+AAAKEIK+LI Sbjct: 359 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLI 418 Query: 416 DDSVSKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMD 475 D SV +V+ GS+LV QAGATM+EVVASVKRVTD+V EI++AS EQS GI ++ QAI QMD Sbjct: 419 DASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMD 478 Query: 476 ESTQQNAALVEQAAAAAQSLQDQAGRLAKVVSVFKL 511 E TQQNAALVEQAAAAAQSLQ+Q+GRL+ V +F+L Sbjct: 479 EVTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,074,520 Number of extensions: 34875 Number of successful extensions: 527 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 71 Length of query: 513 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 424 Effective length of database: 1,198,455 Effective search space: 508144920 Effective search space used: 508144920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)