BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0166.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314051|ref|YP_003778143.1| transcription regulator protein... 372 e-104 gi|300313122|ref|YP_003777214.1| transcription regulator protein... 201 6e-53 gi|300309845|ref|YP_003773937.1| LysR family transcription regul... 162 3e-41 gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 149 3e-37 gi|300312460|ref|YP_003776552.1| LysR family transcription regul... 149 4e-37 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/307 (64%), Positives = 241/307 (78%), Gaps = 3/307 (0%) Query: 1 MADFRKLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGK 60 MAD RKLPNLAALRAF+AAAR++ FSRAAEE+HVTPGAISHQ+RALEE+LGL LF R+GK Sbjct: 1 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK 60 Query: 61 RIAITEAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFID 120 RI+ITE G RFAATIR +L+EIA AAE L+ Q +QRLV+S+ PSFASRWLAPRLW+FID Sbjct: 61 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID 120 Query: 121 RYPDIEVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRL 180 +P++EV+LQS++HLNDL DGIDVG+RFG GNY GL +E + +D+YYPVA+P YR R Sbjct: 121 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS 180 Query: 181 P--SSPQQLRDCVLLRMDGLQESWLPWFKLAGLDLQDPAGGLVTQDSSLTLRAAAEGAGV 238 + P L C LLR+D +ESW PW AGL+L +P GGL+ +DSSLTLR AAEG GV Sbjct: 181 KKLARPADLAHCSLLRVDS-RESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGV 239 Query: 239 ALTRHAIASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQEEIALFK 298 AL RH IASQEI+ GELVRLFD+ SE A+YFV E L KP V F+ W+ EE+ LF Sbjct: 240 ALARHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPEALEKPGVAAFKEWIFEEMRLFH 299 Query: 299 SNERWPG 305 ++ WPG Sbjct: 300 ASAAWPG 306 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 201 bits (511), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 121/289 (41%), Positives = 166/289 (57%), Gaps = 5/289 (1%) Query: 6 KLPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRIAIT 65 +LP + AL AFEAAARH+SF+ AAEE+ +TP A+SH+IR LEE +G LF R+G+ I ++ Sbjct: 4 RLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSIGLS 63 Query: 66 EAGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRYPDI 125 E G R+ +R+AL + + + ++ V PP+FA L PR+ F R+P+I Sbjct: 64 EFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRHPEI 123 Query: 126 EVILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRLP-SSP 184 V L S L DL+ DV +RFG GNYP + E + E+ + VASP Y + P SP Sbjct: 124 VVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPMKSP 183 Query: 185 QQLRDCVLLRMDGLQESWLPWFKLAGL-DLQDPAGGLVTQDSSLTLRAAAEGAGVALTRH 243 L+ LLR E W PWF+ AGL D +P+ GL D L L A G GV LTR Sbjct: 184 ADLKQATLLR--SALEPWQPWFEAAGLKDWVEPSAGLRVDDLGLLLEAVRHGYGVGLTRQ 241 Query: 244 AIASQEIAAGELVRLFDIAWKS-ERAYYFVCHAETLGKPQVGHFRTWLQ 291 A + +A GE+V LFDI ++ AYY V +P+V F +W+Q Sbjct: 242 HFAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWMQ 290 >gi|300309845|ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 162 bits (410), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 153/288 (53%), Gaps = 2/288 (0%) Query: 7 LPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRIAITE 66 +P L +L AFEA AR SF+ AA E+H+TP AISHQ+ LE+ LGL LF R+ K + +T Sbjct: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 Query: 67 AGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRYPDIE 126 AG + + AL I +A + L+ G L + S PSFAS WL PR+ +F R+PDI Sbjct: 62 AGQSYLNRVAGALGAINSATDDLR-HGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 Query: 127 VILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRLPSSPQQ 186 + L +S ++D +D+ +R G+ ++P L+ E ++ + P+ASP + +P Sbjct: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 Query: 187 LRDCVLLRMDGLQESWLPWFKLAGLDLQDPAGGLVTQDSSLTLRAAAEGAGVALTRHAIA 246 L L++ G W WF DL+ L + +++ AA +G GV A Sbjct: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG 240 Query: 247 SQEIAAGELVRLFDIAWKSE-RAYYFVCHAETLGKPQVGHFRTWLQEE 293 + +A+G L +F E +Y VC A +P+V F WL+EE Sbjct: 241 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREE 288 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 149 bits (375), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 156/290 (53%), Gaps = 6/290 (2%) Query: 7 LPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRIAITE 66 LP L L+AFEA AR SF+ AA E+H+T A+SHQ+ LE LG+ LF R+ + IT Sbjct: 4 LPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRITT 63 Query: 67 AGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRYPDIE 126 AG + A I+ A++ I AA+ M QG L + S PS AS WL RL F YP+I Sbjct: 64 AGEAYLARIQGAISAITAAS-MDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPEIT 122 Query: 127 VILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHY-RQGRLPSSPQ 185 L ++ ++ +D+ +R+G+ N+PGL E + E+ P+ASP + R+ RL P Sbjct: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRL-RKPA 181 Query: 186 QLRDCVLLRMDGLQESWLPWFKLAGLDLQDPAGGLVTQD-SSLTLRAAAEGAGVALTRHA 244 L L+R + W WF D++ P V D + ++L AA +G GVAL Sbjct: 182 DLLGVKLIRSNVSVVQWADWFGEFA-DVRAPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 Query: 245 IASQEIAAGELVRLFDIAWKSE-RAYYFVCHAETLGKPQVGHFRTWLQEE 293 +A++ + +L +F + + +A++ V A +P V F WL+E+ Sbjct: 241 VAARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQ 290 >gi|300312460|ref|YP_003776552.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 151/302 (50%), Gaps = 3/302 (0%) Query: 7 LPNLAALRAFEAAARHDSFSRAAEEIHVTPGAISHQIRALEEELGLPLFTRNGKRIAITE 66 LP L AL+ FEAA R S + AA E+ +T A+S QI++LEE PLF R + + TE Sbjct: 5 LPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTE 64 Query: 67 AGLRFAATIRNALTEIAAAAEMLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDRYPDIE 126 A L F A ++ +L IA AAE L G + + + + PS A RWL PRL +F P IE Sbjct: 65 AALSFYAEVKASLDRIALAAEQLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIE 124 Query: 127 V-ILQSSSHLNDLARDGIDVGVRFGLGNYPGLKAELIMEDFYYPVASPHYRQGRLPSSPQ 185 V + + S + +D DV + G + ++D P+ASPH+ + P+ Sbjct: 125 VRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYECMRFLDDVSVPLASPHFLETHPIRVPR 184 Query: 186 QLRDCVLLRMDGLQESWLPWFKLAGLDLQDPAGGLVTQDSSLTLRAAAEGAGVALTRHAI 245 + L+ + +W W AG+ ++ G V + S L+L+AAA GV + A+ Sbjct: 185 DFVEVPLIHLSSRSAAWSQWLSKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLAL 244 Query: 246 ASQEIAAGELVRLFDIAWKSERAYYFVCHAETLGKPQVGHFRTWLQE--EIALFKSNERW 303 ++AAG LVRLF Y+ +C + P + F TWL++ + + F W Sbjct: 245 VDDDLAAGRLVRLFPEIVLHGEGYHMLCRSGAETNPALKTFITWLKQMGQASSFDPQRTW 304 Query: 304 PG 305 P Sbjct: 305 PA 306 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,018,694 Number of extensions: 43936 Number of successful extensions: 319 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 62 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)