BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0164.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314049|ref|YP_003778141.1| lipoate-protein ligase B protei...   367   e-103

>gi|300314049|ref|YP_003778141.1| lipoate-protein ligase B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  367 bits (943), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 194/222 (87%), Gaps = 1/222 (0%)

Query: 8   PPALLAASTPTAPQVVRRGVEDYQVSFDAMRAYTDSRTADSPDQLWIVEHPPVFTLGLGA 67
           PPA    +    P++VRRGVE Y+ SF AMRAYTD+RTAD+PDQLWIVEHPPV+TLGLGA
Sbjct: 6   PPASATPAGARRPEIVRRGVEPYEASFAAMRAYTDARTADTPDQLWIVEHPPVYTLGLGA 65

Query: 68  DIAHVLNPHAIPVVQTDRGGEVTYHGPGQVVVYLLMDLRRNHPGARLFAREFVQKIEQAV 127
           D AHVLNPH IP+VQTDRGGEVTYHGPGQVV+YLLMDLRRN  GARLFAREFV  IE+AV
Sbjct: 66  DRAHVLNPHDIPIVQTDRGGEVTYHGPGQVVIYLLMDLRRNRSGARLFAREFVHNIEEAV 125

Query: 128 IDTLAAYNLAGERKQGAPGIYVSAGPWQGAKIAALGLKIRANGCTYHGVSLNVAMDLAPF 187
           I TLAAYNLAG RK+GAPGIY + GPWQGAK+AALGLKIR NGCTYHGVSLNVAMDLAPF
Sbjct: 126 IATLAAYNLAGVRKEGAPGIYAADGPWQGAKVAALGLKIRGNGCTYHGVSLNVAMDLAPF 185

Query: 188 SWINPCGYEGLATVDMQTLN-VDAPLSDVQTLLADKLVAHFA 228
           SWINPCGYEGLATVDMQTL   +A L+DVQ LLAD+L+A FA
Sbjct: 186 SWINPCGYEGLATVDMQTLGAANARLADVQDLLADQLIARFA 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 746,453
Number of extensions: 32767
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)