BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0156.p (248 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr... 94 2e-20 gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb... 78 8e-16 gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb... 77 1e-15 gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ... 67 1e-12 >gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 53 LPLAGLLALAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVTLYAIGSMITAIPLT 112 +P+A L AL ++AF TE + GLLP+++A+LGVS S G LVT YA+G + A LT Sbjct: 1 MPIA-LWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLLT 59 Query: 113 ATTQSWRRKPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFAGVVWALIAGYAARM 172 ATT RK LL+ +V FV+ N A++ Y + R A G + + + A + Sbjct: 60 ATTGRLPRKTLLVALMVVFVVGNLACAIAPDYTTLMIGRVVASFAHGAFFGVGSVVATSL 119 Query: 173 APSHLQGRAIAVTMAGIPIALSLGIPAATFLGASVGWRLSFGIMSAMTLILIVWTIARVP 232 P Q AIA+ G+ +A LG+P T+LG S GWR +F ++ + +I + T VP Sbjct: 120 VPKEKQASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTVIGVIALAATAVLVP 179 Query: 233 DFPGQGE 239 G E Sbjct: 180 RSQGGEE 186 >gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 422 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 7/186 (3%) Query: 56 AGLLALAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVTLYAIGSMITAIPLTATT 115 +G+ +LA+ F V E +PA LL +++DL VS+ GQ VT AI + A + T Sbjct: 37 SGIASLALGVFSLVTAEFLPASLLTAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPLLT 96 Query: 116 QSWRRKPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFAGVVWALIAGYAARMAPS 175 ++ RK +++ + ++ N + + + P+ L AR GV G W++ A A R+ P Sbjct: 97 RNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLVPD 156 Query: 176 HLQGRAIAVTMAGIPIALSLGIPAATFLGASVGWRLSF---GIMSAMTLILIVW-TIARV 231 HL RA+++ + G+ +A P ++G GWR +F G++S + I I W I R+ Sbjct: 157 HLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVS-LVAIAIQWIAIPRL 215 Query: 232 P--DFP 235 P D P Sbjct: 216 PPKDHP 221 >gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 385 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 2/173 (1%) Query: 58 LLALAMAAFITVLTEAMPAGLLPQMSADLGVSESLIGQLVTLYAIGSMITAIPLTATTQS 117 L ALA+AAF TE + GLLP ++ DLGV+ G LV+ YA+G A L T Sbjct: 5 LFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAK 64 Query: 118 WRRKPLLMTAIVGFVIVNTITAVSTSYPLTLAARFFAGVFAGVVWALIAGYAARMAPSHL 177 W RK L+ + F++ N + A++ +Y + AR + + + AA + Sbjct: 65 WPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQK 124 Query: 178 QGRAIAVTMAGIPIALSLGIPAATFLGASVGWRLSFGIMSAMTLI--LIVWTI 228 + +A+A+ G+ +A LG+P T G + GWR +FG ++A+ ++ +++WT+ Sbjct: 125 RAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTM 177 >gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 8/210 (3%) Query: 28 NPDTPAPASARPHPANSTISQTAGKLPLAGLLALAMAAFITVLTEA-MPAGLLPQMSADL 86 NP P++ P+ AG L AG LAL A + TE M A LLP+M+AD Sbjct: 2 NPPPLGPSA----PSACASPTQAGSLLTAGFLALGTFA---IGTEGFMIAPLLPRMAADF 54 Query: 87 GVSESLIGQLVTLYAIGSMITAIPLTATTQSWRRKPLLMTAIVGFVIVNTITAVSTSYPL 146 G+S ++ LV ++ + +++ T + + R+ +L+ A+ F N + A S+S+ Sbjct: 55 GMSVPMVASLVVIFTLVLALSSPISTVLSAAMNRRRVLIAAMTAFTAANLLAACSSSFTG 114 Query: 147 TLAARFFAGVFAGVVWALIAGYAARMAPSHLQGRAIAVTMAGIPIALSLGIPAATFLGAS 206 L AR V AG+ + A M +GRA+A+ G+ +LG+P +G + Sbjct: 115 LLVARLLMAVAAGLYTPNASALAGAMVAPGQRGRALAIVSGGMTSPSALGLPLGAVVGHA 174 Query: 207 VGWRLSFGIMSAMTLILIVWTIARVPDFPG 236 GWR +F +SAM + + + VP G Sbjct: 175 FGWRATFLAVSAMGAVALAGILLGVPRQAG 204 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 612,129 Number of extensions: 21085 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 9 Length of query: 248 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 165 Effective length of database: 1,226,865 Effective search space: 202432725 Effective search space used: 202432725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)