BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0148.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   100   1e-22
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    96   7e-21

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 141/300 (47%), Gaps = 26/300 (8%)

Query: 63  PNPDVSWLAAMYERVWREHRDVDCIVAFGGGSVIDCAKAM-LTRTPSGRFDELLAHLRDG 121
           PNP+   + A    ++R+H   D IVA GGGS ID AK + +  T  G      A +  G
Sbjct: 67  PNPNEGAVRAAVA-LFRQH-GCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSF-ALIEGG 123

Query: 122 DALSGAGAKTLIAVPTTAGTGSEVTPWATIWDADAGSKYSLHQSWTWPAAAIIDPQLMLS 181
            A   A    +IA+PTTAGTGSEV   A I   D G K  +   +  P  AI DP+L L 
Sbjct: 124 LANITAKTAPVIAIPTTAGTGSEVGRGA-ILILDDGRKVGIISPYLVPKLAICDPELTLG 182

Query: 182 LPPGITLASGLDALSHALESIWNVNRNPVSSSLAAAAARTIVATLPDLMAHPHDLALRER 241
           LPP +T A+G+DA++H LE+    + NP +  +A        A +      P D   R  
Sbjct: 183 LPPLMTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATREPGDREARLN 242

Query: 242 MATAALQAGLAFSNTKTALAHSLSYDI-----TLHHGVAHGIACSFSLPHVMA------- 289
           M +A++Q  +AF        HSLS+ +      LHHG  + I     LP ++A       
Sbjct: 243 MMSASMQGAMAFQK-GLGCVHSLSHSLGGINPRLHHGTLNAI----FLPAIIAFNESAAS 297

Query: 290 LAFGNDEAVDALLLDIFDAADAQQAVAVLSAFLERLGVSTDPSHYGVAEA-WDALVQRAL 348
           +   N  A  A  + +   A+   A+  +S    RLG+       GV E+ +  ++Q AL
Sbjct: 298 MVKDNKMARMAHAMGLGSGAEIGPAIREMS---RRLGLPAGLGELGVTESMFPQIIQGAL 354


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 125/278 (44%), Gaps = 44/278 (15%)

Query: 13  GSGSLAQL---PALLNGRRALLITFPEAAALGLEA-RIAQLLGPQLAGIENAVQPNPDVS 68
           G GSL  L     LL  +RAL++  P   A   EA R+A L+G + AGI +  Q    V 
Sbjct: 16  GHGSLQHLVRETELLGAQRALVLCTPGQRA---EAERVAALIGARCAGIFD--QAVMHVP 70

Query: 69  WLAAMYERVWREHRDVDCIVAFGGGSVIDCAKAMLTRTPSGRFDELLAHLRDGDALSGAG 128
              A + R        DC +A GGGS +   KA+   +      EL              
Sbjct: 71  IETARHAREVARALGADCAIAIGGGSTMGLGKAIALES------EL-------------- 110

Query: 129 AKTLIAVPTTAGTGSEVTPWATIWDADAGSKYSLHQSWTWPAAAIIDPQLMLSLPPGITL 188
              ++A+PTT   GSE+TP   +   +AG K +   +   P   I DP L L LP  +++
Sbjct: 111 --PILAIPTTY-AGSEMTPIYGL--TEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLSV 165

Query: 189 ASGLDALSHALESIWNVNRNPVSSSLAAAAARTIVATLPDLMAHPHDLALRERMATAALQ 248
            SG++A++HA E ++  + NP+ S LA    R +   LP L A   D+  R R    A  
Sbjct: 166 TSGINAMAHAAEGLYAPDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWL 225

Query: 249 AGLAFSNTKTALAHSLSYDITLHHGVAHGIACSFSLPH 286
            G    N            ++LHH + H +  S++LPH
Sbjct: 226 CGTVLGNV----------GMSLHHKLCHTLGGSYNLPH 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,206,733
Number of extensions: 51847
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)