BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0147.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC trans...   154   6e-39
gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC trans...   140   1e-34

>gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  154 bits (390), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 141/221 (63%), Gaps = 1/221 (0%)

Query: 58  LADGLPQIGDFLSRSFPPNWKILGNLVGPA-VETVQIAIWGTLLGVIGAIPVSFLAARNL 116
           L D   Q+ D L+R +P +W   G+ V    +ET+ IA  GTLL ++ AIP   L A NL
Sbjct: 56  LYDAPEQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNL 115

Query: 117 NRNRVVYQAVRQMLNVTRSINELILALVFVSAVGLGPFPGVLALALHGIGMVGKFFAESI 176
            R+R +    R +L  +RS+N L+ AL+F++  G GP  G LA+A   IG VGK   E+I
Sbjct: 116 TRHRGLNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETI 175

Query: 177 EEIDDGPLEALRATGARPLQVIVFGVLPQVITAWIATVLYRFEVNLRQATVLGMVGAGGL 236
           E++  GP+EAL+A+GA     I +G  PQ+  A+++ VL R+++N+R++ VLG+VGAGG+
Sbjct: 176 EQMPRGPIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGV 235

Query: 237 GFELVSSLKLFKYQDTATCIVVVTLMVVVADTISSRLRQMI 277
           G  L ++L LF++   AT +V +  +V+V + + +++R+ I
Sbjct: 236 GMVLDTALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRI 276


>gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  140 bits (352), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 138/221 (62%), Gaps = 9/221 (4%)

Query: 30  WLLSIAAVAAVAFILAWSAQGTQLSWGELADGLPQIGDFLSRSFPPNWKILGNLVGPAVE 89
           WL+++ A+        ++A     SW   + GL     FL R FPP+      L G   E
Sbjct: 27  WLIALYAI--------YAATQLGFSWERFSSGLGNGAKFLGRMFPPDLSKGDILWGGIKE 78

Query: 90  TVQIAIWGTLLGVIGAIPVSFLAARNLNRNRVVYQAVRQMLNVTRSINELILALVFVSAV 149
           T+QIA+  +L G++ ++P+  + ARNL  + + + A R +++V RS++ +I+A++FV AV
Sbjct: 79  TLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPA-RALVSVCRSLHPVIVAILFVKAV 137

Query: 150 GLGPFPGVLALALHGIGMVGKFFAESIEEIDDGPLEALRATGARPLQVIVFGVLPQVITA 209
           G G   GVLAL +  IG +GK FAE+IEEI    +EA+RATGA  + VI+FGVLPQV++ 
Sbjct: 138 GFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGASFMNVILFGVLPQVMSR 197

Query: 210 WIATVLYRFEVNLRQATVLGMVGAGGLGFELVSSLKLFKYQ 250
           ++    Y+ + NLR +T++G+VGAGG+G  L S+ + F Y 
Sbjct: 198 FVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYD 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 818,789
Number of extensions: 32261
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 3
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)