BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0146.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC trans... 219 3e-58 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 171 5e-44 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 165 4e-42 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 159 2e-40 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 157 7e-40 >gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 219 bits (557), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/251 (43%), Positives = 163/251 (64%), Gaps = 5/251 (1%) Query: 2 IRIRSLTKQYG-SNAVLRGIDLDVAPGEFLVVLGPSGAGKSTLLRCINGLATPTSGELVA 60 I I+ L K+Y + +L+GIDL + + ++GPSG GKSTL+RCIN L P+ G + Sbjct: 5 IEIQGLVKEYKPGHPILKGIDLKIGDAGLIAIIGPSGTGKSTLIRCINRLVDPSRGAIWF 64 Query: 61 AG----FDATDTRNGNIRKLRQQVAMIFQHHNVVPRLSVLKNVLTGRLGQTATLSSVLQL 116 G + + R +R+ R+ + M+FQ +N+V RLSV++N+L GRLG ++ + Sbjct: 65 EGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLSVMENLLCGRLGYVNAFTAWRRN 124 Query: 117 FSRQDVALAMDCLRRVELEHKAEQRTDALSGGQRQRVGIARALAQRPQVILADEPVASLD 176 F+++D+A A + L V L + A QR DALSGGQRQRVGIARAL QRP+++LADEP +SLD Sbjct: 125 FAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQRVGIARALMQRPRLLLADEPTSSLD 184 Query: 177 PKTSRLVLQYLRAACRELGITVVCNLHQVDYAREFGDRIVGLAGGKLVFDGRGDELRESH 236 PKTS ++ L+ R I V+ N+H V+ A+ + DRI+G++GG +V+DG + L + Sbjct: 185 PKTSFEIISLLKEQGRAQKIPVIVNIHDVELAKRYADRIIGMSGGHVVYDGNAENLSDDF 244 Query: 237 LNLIYSGLDQV 247 L IY G D + Sbjct: 245 LKQIYGGEDWL 255 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 171 bits (434), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 149/239 (62%), Gaps = 11/239 (4%) Query: 1 MIRIRSLTKQYGSNAVLRGIDLDVAPGEFLVVLGPSGAGKSTLLRCINGLATPTSGELVA 60 M+ +S++K++GSN VL GI+L + GE +V++GPSG+GKSTLLRCIN L G+L+ Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 61 AGFDATDTRNGNIRKLRQQVAMIFQHHNVVPRLSVLKNVLTG-RLGQTATLSSVLQLFSR 119 G + + ++R +RQ+ M+FQ N+ P+L+ L+NV G R + A+ S Sbjct: 61 DGISVL-SGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGAS--------SE 111 Query: 120 QDVALAMDCLRRVELEHKAEQRTDALSGGQRQRVGIARALAQRPQVILADEPVASLDPKT 179 + ALA + L +V L + + LSGGQ+QRV IARALA RP+++L DEP ++LDP+ Sbjct: 112 EANALASELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPEL 171 Query: 180 SRLVLQYLRAACRELGITVVCNLHQVDYAREFGDRIVGLAGGKLVFDGRGDELRESHLN 238 + VL+ +++ E G+T++ H++ +AR G R++ + G + DG EL E+ N Sbjct: 172 RQEVLRVMQSLAEE-GMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIENSCN 229 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 165 bits (417), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 144/232 (62%), Gaps = 8/232 (3%) Query: 1 MIRIRSLTKQYGSNAVLRGIDLDVAPGEFLVVLGPSGAGKSTLLRCINGLATPTSGELVA 60 +++I+ L K +GSN VL G+ LDV G+ + ++G SG+GKSTLLRC+NGL +G++ Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 61 AGFDATDTRNGNIRKLRQQVAMIFQHHNVVPRLSVLKNVLTGRLGQTATLSSVLQLFSRQ 120 G D N+R+LR+QV ++FQ +N+ P L+V +N+ T L+++ ++ + Q Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNI-------TLALTTIKKMSTEQ 116 Query: 121 DVALAMDCLRRVELEHKAEQRTDALSGGQRQRVGIARALAQRPQVILADEPVASLDPKTS 180 +A L+ V LE+K + + LSGGQ QRV IAR+LA P+++L DE ++LDP+ + Sbjct: 117 AKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELT 176 Query: 181 RLVLQYLRAACRELGITVVCNLHQVDYAREFGDRIVGLAGGKLVFDGRGDEL 232 VL+ + R G+T+V H++ +AR+ D +V + G++ G DEL Sbjct: 177 AEVLKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDEL 227 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 149/233 (63%), Gaps = 14/233 (6%) Query: 1 MIRIRSLTKQYGSNAVLRGIDLDVAPGEFLVVLGPSGAGKSTLLRCINGLATPTSGELVA 60 ++ I ++TK++GSN VL GI L V G+ + ++G SG+GKST+LRCINGL T G + Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 61 AGFDATDTRNGNIRKLRQQVAMIFQHHNVVPRLSVLKNV-LTGRL-GQTATLSSVLQLFS 118 AG T ++ ++ +LR+ V M+FQH+N+ P L+V +N+ L+ R+ +TAT + + Sbjct: 63 AGHKLTH-KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATET------A 115 Query: 119 RQDVALAMDCLRRVELEHKAEQRTDALSGGQRQRVGIARALAQRPQVILADEPVASLDPK 178 R+ A+ L++V L+HK + + LSGGQ+QRV IAR+LA PQV+L DE ++LDP+ Sbjct: 116 RET---AIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPE 172 Query: 179 TSRLVLQYLRAACRELGITVVCNLHQVDYAREFGDRIVGLAGGKLVFDGRGDE 231 + VL+ + R G+T++ H++++AR D V + GK V++ R E Sbjct: 173 LTAEVLKVMEELARG-GMTMLLVTHEMEFARRVADLTVFMHQGK-VWEARPSE 223 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 157 bits (398), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 13/234 (5%) Query: 1 MIRIRSLTKQYGSNAVLRGIDLDVAPGEFLVVLGPSGAGKSTLLRCINGLATPTSGELVA 60 +I I ++ K++G N VL+GI LDV PGE + ++G SG+GKSTLLRCINGL + G + Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 61 AG--FDATDTRNGNIRKLRQQVAMIFQHHNVVPRLSVLKNVLTGRLGQTATLSSVLQLFS 118 AG A++ +R LR +V MIFQ N+ P LSV +NV+ + V + Sbjct: 63 AGAKLGASELE---LRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPM-------IVKGVSE 112 Query: 119 RQDVALAMDCLRRVELEHKAEQRTDALSGGQRQRVGIARALAQRPQVILADEPVASLDPK 178 + + A L +V L HK + D LSGGQ+QRV IARAL+ PQ +L DE ++LDP+ Sbjct: 113 AEAMKTAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPE 172 Query: 179 TSRLVLQYLRAACRELGITVVCNLHQVDYAREFGDRIVGLAGGKLVFDGRGDEL 232 VL +R +E G+T++ H++ +ARE +R+V + GK+ G +EL Sbjct: 173 LVNEVLTVMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEEL 225 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 810,935 Number of extensions: 34665 Number of successful extensions: 541 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 138 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)