BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0145.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314012|ref|YP_003778104.1| phosphate/phosphonate ABC trans...   121   4e-29

>gi|300314012|ref|YP_003778104.1| phosphate/phosphonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  121 bits (304), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 96/177 (54%), Gaps = 2/177 (1%)

Query: 32  IEALRSKKLDVAYLGPFSYVLATSIANVEAFSVAETRKTGKSAYKSLIIVRKDSGIETVP 91
           IEA+RS +L V    P     A +IA    F+V    K G   Y   +IVRKDS I+ + 
Sbjct: 104 IEAMRSGRLHVGGFSPGPTNFAVNIAGAVPFAVIGDAK-GYQGYTLNVIVRKDSTIQKMT 162

Query: 92  QLKGRTMAFVDPSSASGHLFPTAGLQKQGVEPNKYFSRVIFSGSHDASILAVANKKVDAA 151
            LKG+ +A   PSS SGH+ P A   K GV P+K + +VIFSG HD SIL V +   DAA
Sbjct: 163 DLKGKKVAHTAPSSNSGHMAPMALFPKLGVTPDKDY-KVIFSGKHDQSILGVNSGDYDAA 221

Query: 152 AVADRILAAAIAKGVVKQSDFNIVWTSPDIPESPMVWRKDLDPELKKKVAAAFANIK 208
           AVA  +    + +GV+K  +F ++W S   P     +  DL+P  + K+   F + +
Sbjct: 222 AVASDVFDRMVERGVIKAENFRVIWHSEKFPTQDFAYAHDLEPNFRDKMLKCFYDYR 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 645,453
Number of extensions: 22587
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)