BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0143.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311117|ref|YP_003775209.1| alpha/beta hydrolase superfamil...   153   1e-38

>gi|300311117|ref|YP_003775209.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  153 bits (387), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/243 (39%), Positives = 141/243 (58%), Gaps = 8/243 (3%)

Query: 17  IDGDRVKPWLVFLHEGLGCTAMWKDFPQRLCKATGCRGLLYDRLGYGLSDALQHRREPDY 76
           +DG+   P +V LH+ LG  ++W+DFP +L + TG   + YDR G+G S A Q R  P +
Sbjct: 24  LDGE--LPAIVLLHDSLGAVSLWRDFPFQLSQQTGRAVVAYDRYGFGQSSARQDRLAPGF 81

Query: 77  LHRYAVDELPQALTALLPGQACILIGHSDGGSIALLHAAQRPPLLQAIITEAAHVFVESV 136
           +   A   L   L  L   QA +L+GHS GG +A+  AA+ P  + A+ITE+A  FVE  
Sbjct: 82  IAEEARPWLLTVLQQLGLTQA-VLLGHSVGGGMAIAAAAELPEQVVAVITESAQAFVEDR 140

Query: 137 TLEGIRAADRAYAD-GKLKGLQKYHG---DKTEQIFKAWSDTWLSPAFAGWNIEADLPRI 192
           TL+GIR A   +A+  +L  L ++HG   DK + + +AW++TWL+P FA W++   L R+
Sbjct: 141 TLQGIRKAREQFANPDQLARLARHHGQDQDKAQWVLEAWTETWLAPEFAAWSLTPALARL 200

Query: 193 DCPALVMQGIDDQYGTPAQVDAIVSGIAKGNGAPAHKAMLPDCGHAPHHEQPQAVLDLMR 252
            CP L + G +D+YG+ A    I +      G      +L  CGH PH EQP AVL  + 
Sbjct: 201 HCPVLAIHGDEDEYGSLAHPHRIATQPQAFPGQ-GRSLILSGCGHVPHREQPDAVLRAVV 259

Query: 253 QFV 255
           +F+
Sbjct: 260 EFL 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 902,535
Number of extensions: 38458
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)