BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0138.p (905 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ... 810 0.0 gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb... 649 0.0 gi|300310770|ref|YP_003774862.1| hypothetical protein Hsero_1438... 74 5e-14 >gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/514 (78%), Positives = 452/514 (87%), Gaps = 10/514 (1%) Query: 398 PAAPIPAPARPYRP-------TEVPLPGIELLDQGSDMPVEMDETQLLEIGQLIEQRLKE 450 P AP PAP P E+PLP ++LLD+ + +E+D QL E G+LIEQRLKE Sbjct: 5 PTAPEPAPVSMAYPDYVDEPRVEIPLPSLDLLDEVPESRIEVDTEQLQETGRLIEQRLKE 64 Query: 451 FKVPVTVLGAYAGPVITRFEIEPALGVRGAQIVNLMKDLARALGLTSIRVVETIPGKTCM 510 FKVPVTVLGA AGPVITRFE+EPA GVRGAQ+VNLMKDL+RALGLTSIRVVETIPGKTCM Sbjct: 65 FKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCM 124 Query: 511 GLELPNPKRQMIRLAEIIQSEAYARSASHLTLAMGKDITGVPVATDLARAPHMLVAGTTG 570 GLELPN +RQMI+L+EI+ S+AY +SASHLT+AMGKDITG PV TDLARAPHMLVAGTTG Sbjct: 125 GLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTG 184 Query: 571 SGKSVAINAMILSLLYKATPDDVRLIMIDPKMLELSVYDGIPHLLAPVVTDMKLAAHALS 630 SGKSVAINAMILSLLYKATP++VRLIMIDPKMLELS+Y+GIPHLLAPVVTDM+ AAHAL+ Sbjct: 185 SGKSVAINAMILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALN 244 Query: 631 WCVAEMDKRYRLMSALGVRGLAGYNQKIADGIAAEKRVKNPFSLTPDAPEPLDPLPMIVV 690 W V EM++RY+ MS LGVR LAGYNQK+ + A +++ NPFSLTPDAPEPL+ LP IV+ Sbjct: 245 WAVDEMERRYKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVI 304 Query: 691 VIDELADLMMVAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAF 750 VIDELADLMMV GKK+EELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAF Sbjct: 305 VIDELADLMMVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAF 364 Query: 751 QVSSKIDSRTVLDQMGAETLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEHLKAHG 810 QVSSKIDSRTVLDQMGAE+LLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVE+LK+ G Sbjct: 365 QVSSKIDSRTVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFG 424 Query: 811 EPQYEEAILAGPASEEPQQTDMF--GEPGD-EADPLYDEAVAYVTRSRRASISSVQRQFR 867 EP+Y E ILA P SE+ Q DMF GE GD EADPLYDEAVA+V ++RRASISSVQRQ R Sbjct: 425 EPRYIEEILAPPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLR 484 Query: 868 IGYNRAARLVEQMEAAGILSSMSKSGSRDVLAPP 901 IGYNRAARLVEQME AG+LS+MS++GSRD+L PP Sbjct: 485 IGYNRAARLVEQMETAGVLSAMSRNGSRDILVPP 518 >gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 780 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/491 (67%), Positives = 390/491 (79%), Gaps = 8/491 (1%) Query: 416 LPGIELLDQG--SDMPVEMDETQLLEIGQLIEQRLKEFKVPVTVLGAYAGPVITRFEIEP 473 LP + LLD+ S V ++ + +LIE++L +F V V V+ AY GPVITR+EIEP Sbjct: 284 LPPLSLLDEAPPSQQTVSVETLEF--TSRLIEKKLSDFGVEVKVVAAYPGPVITRYEIEP 341 Query: 474 ALGVRGAQIVNLMKDLARALGLTSIRVVETIPGKTCMGLELPNPKRQMIRLAEIIQSEAY 533 A GV+G+QIVNL +DLAR+L LTSIRVVE I GK MGLELPNPKRQ++RL EI+ S+ Y Sbjct: 342 ATGVKGSQIVNLARDLARSLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVY 401 Query: 534 ARSASHLTLAMGKDITGVPVATDLARAPHMLVAGTTGSGKSVAINAMILSLLYKATPDDV 593 S S LT+A+GKDI G PV DLA+ PH+LVAGTTGSGKSV INA ILSLLYK+TP V Sbjct: 402 NDSHSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSTPRQV 461 Query: 594 RLIMIDPKMLELSVYDGIPHLLAPVVTDMKLAAHALSWCVAEMDKRYRLMSALGVRGLAG 653 RLI+IDPKMLELS+Y+GIPHLLAPVVTDM+ A HAL+W V EM++RY+ MS LGVR LAG Sbjct: 462 RLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAG 521 Query: 654 YNQKIADGIAAEKRVKNPFSLTPDAPEPLDPLPMIVVVIDELADLMMVAGKKIEELIARL 713 YNQKIAD +++ NPFSLTPDAPEPL+ L IV++IDELADLMMV GKK+EELIAR+ Sbjct: 522 YNQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARI 581 Query: 714 AQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSRTVLDQMGAETLLGH 773 AQKARAAGIHLILATQRPSVDVITGLIKAN+PTR+AFQVSSKIDSRT+LDQMGAETLLG Sbjct: 582 AQKARAAGIHLILATQRPSVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGM 641 Query: 774 GDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEHLKAHGEPQYEEAILAGPASE----EPQQ 829 GDML+ PPG+G P RVHGAFVSD+EVHRVVEHLK+ GEP Y E IL G E Sbjct: 642 GDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDADGGGSG 701 Query: 830 TDMFGEPGDEADPLYDEAVAYVTRSRRASISSVQRQFRIGYNRAARLVEQMEAAGILSSM 889 G G E D +YD+AVA V + RRASIS VQR RIGYNRAARL+EQME +G++S+M Sbjct: 702 AAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTM 761 Query: 890 SKSGSRDVLAP 900 +G+R++L P Sbjct: 762 QSNGNREILVP 772 >gi|300310770|ref|YP_003774862.1| hypothetical protein Hsero_1438 [Herbaspirillum seropedicae SmR1] Length = 387 Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 123/256 (48%), Gaps = 40/256 (15%) Query: 3 LFLLDWFGWSFLWILPLLGRVLLSLLSGKG-LRGRGSIRIWLGTLAVLCASSAIEAMLRS 61 + + WFGWS LW+LPLL R + L K GRG+IR+W G+L +L AS AIEA++R+ Sbjct: 1 MIFVKWFGWSVLWLLPLLLRTVARALGRKSVFGGRGAIRLWCGSLLLLVASGAIEALIRA 60 Query: 62 Q---GDAILETDLFGQALARNVTAAFGKLIAVIALLTTGLIGLFW----LFGRRKTRPDL 114 Q GD L G AL + A + +AV +L +GL W LFGR ++ Sbjct: 61 QLSSGDDGPGAALMGGALLDALGARISRGLAVAVMLVLLALGLKWLLGALFGRARSEERE 120 Query: 115 DADTSSLPLQASVPRRTQANIAPTIRNMPAAQSHRPPPAQ-------------------- 154 D L PRR +I M + +S P A+ Sbjct: 121 DHHPE---LDLGPPRR--GSIESERVRMSSLRSSFPAGAERRAPARPVARPAARAPASPF 175 Query: 155 -PKPPGSPASPAFGNL--TRKRDPWPLP-NELPRAANPAGNWPGASQHKAEPPKRPARPA 210 P+P + SPA + R+ W +P + L + G WP A + A+P K RP Sbjct: 176 EPRPRPARLSPAAERTPDSAPREDWQVPLSALTGNGSQRGKWP-ALKPGAQPAK--PRPE 232 Query: 211 SEWAAFESLRPTQAML 226 SEWAAFE+LRPT+AML Sbjct: 233 SEWAAFETLRPTEAML 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,656,051 Number of extensions: 109783 Number of successful extensions: 651 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 644 Number of HSP's successfully gapped: 5 Length of query: 905 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 811 Effective length of database: 1,174,780 Effective search space: 952746580 Effective search space used: 952746580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)