BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0131.p (578 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 676 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 597 e-172 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 588 e-169 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 561 e-161 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 525 e-150 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/582 (64%), Positives = 452/582 (77%), Gaps = 7/582 (1%) Query: 1 MKWFYNLKIATKLIATFLTVIVLATGLGVFAISQLDKVNRASTDIATNWLPTIRTLAQLK 60 MKWFY+L+I+ KLI TFL V+ + LGVF+I QLD+VN AST+I+TNWLP+IRTLA+L+ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 FTASRIRSFEQQHILAADAKEFEEIEQNANRQLDALAASRKLYESQITEPEERALYPELG 120 SR+RSFE QHILA DAKE+EE+E+ Q++ L ++ Y +QI+EPEE+A+YPE+ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KTLDVMVAEHPRIIALSRDNKNAEARALMKGESTKSYRKAIEILDKLSAVNERGSDISNK 180 K + V+EH +IIALSR K+ EAR L +GESTK+YR +++ +DKL+AVN++G+DISNK Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 LADDTYHNGRLWIIAMLALCIIAAMTLAIMVARIISRPLTQAVKIARQVADGDLTADIQQ 240 AD Y RLWII +A CI AM LA+ V+R+I+RPL +AV +A++VA GDLT I+ Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 NSEDETGQLLGALKQMNDNLLRIVSSVRTGTDTIATASSEIATGNMDLSSRTEQQAGSLE 300 +DETGQLL ALK MND+L+ IV VR GT TI TAS+EIA+GN+DLSSRTE+QA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEEMTSTVKQNADNARQANQLAASASAVAIQGGNVVGQVVDTMGSINESSRKIVD 360 ETASAMEE+TSTVKQNADNARQANQLA SAS VA QGG VV QVVDTMGSIN SSRKI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+ AAKEIK+LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVTTVDIGSKLVAQAGSTMDEVVSSVKRVTDIVGEITAASHEQSVGLDEINRAITQMDEV 480 SV VD+GSKLV +AG TM EVV SV+RVTDIVGEI++AS EQS G++++N AI QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQEQASNLSQIVSVFKLDRHA-LPQGQTHTATAS-KRTVNITP 538 TQQNAALVEEAAAAAQSLQEQA L+Q V FKL++ P + AS RT + Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVRH 540 Query: 539 EPASLPAKTNVKTASKTAAVKKTIASEAP--AHDDAGSWEQF 578 PA+ PA T A+ A K S P A +D GSWEQF Sbjct: 541 APATRPAAT---LAASAAPAKPASGSRLPGGAAEDGGSWEQF 579 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 597 bits (1539), Expect = e-172, Method: Compositional matrix adjust. Identities = 330/516 (63%), Positives = 400/516 (77%) Query: 1 MKWFYNLKIATKLIATFLTVIVLATGLGVFAISQLDKVNRASTDIATNWLPTIRTLAQLK 60 M WF NLKIA KLI +F VIVL LG+FAI +L VN+ASTD+ATNWLPTI+ ++ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 FTASRIRSFEQQHILAADAKEFEEIEQNANRQLDALAASRKLYESQITEPEERALYPELG 120 + R+R E Q + AA E E+ + +LD LA R YE+QI+E EE+ LY + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KTLDVMVAEHPRIIALSRDNKNAEARALMKGESTKSYRKAIEILDKLSAVNERGSDISNK 180 K+ + + +S + K EARAL KG+S K++R IE +D++ VN+ GS S+ Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 LADDTYHNGRLWIIAMLALCIIAAMTLAIMVARIISRPLTQAVKIARQVADGDLTADIQQ 240 +A+ Y + LWII +LA ++ A+ LA+MVAR +SRPL +AV +A +VA GDLT DI+ Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 NSEDETGQLLGALKQMNDNLLRIVSSVRTGTDTIATASSEIATGNMDLSSRTEQQAGSLE 300 S DETG L+ +L+ MND+L +IV VRTGTDTI TAS EIATGN+DLSSRTE+QAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEEMTSTVKQNADNARQANQLAASASAVAIQGGNVVGQVVDTMGSINESSRKIVD 360 ETASAMEE+T+TVKQNADNARQANQLAASAS +A QGG VVGQVV TM I ESS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKQLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AAKEIKQLIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVTTVDIGSKLVAQAGSTMDEVVSSVKRVTDIVGEITAASHEQSVGLDEINRAITQMDEV 480 SV V GS+LV +AG+TM EVV+SV+RVTD+V EI+AAS+EQS G++EINRAITQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQEQASNLSQIVSVFKLDR 516 TQQNAALVEEAAAAAQSLQ+QA+ LSQ+VSVFKL R Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 588 bits (1516), Expect = e-169, Method: Compositional matrix adjust. Identities = 331/578 (57%), Positives = 413/578 (71%), Gaps = 7/578 (1%) Query: 1 MKWFYNLKIATKLIATFLTVIVLATGLGVFAISQLDKVNRASTDIATNWLPTIRTLAQLK 60 M WFYNLKIA KL A FL V+V GLG F+ +L VN++STDIA NWLP+I L+++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 FTASRIRSFEQQHILAADAKEFEEIEQNANRQLDALAASRKLYESQITEPEERALYPELG 120 +R RSF+ Q +L AD +E + + A++Q+ L Y ++EP E+ LYPE+ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KTLDVMVAEHPRIIALSRDNKNAEARALMKGESTKSYRKAIEILDKLSAVNERGSDISNK 180 + + + H R+ AL ++ A ALM ST YRK E + +LS VN +G+ +S+ Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 LADDTYHNGRLWIIAMLALCIIAAMTLAIMVARIISRPLTQAVKIARQVADGDLTADIQQ 240 AD Y + I+A++ C++ AM L+ +AR+++RPL AV IARQVA GDLTADI Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 NSEDETGQLLGALKQMNDNLLRIVSSVRTGTDTIATASSEIATGNMDLSSRTEQQAGSLE 300 DETGQLL AL+QMN NLL IV VR GTDTI TAS+EIATGNMDLSSRTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEEMTSTVKQNADNARQANQLAASASAVAIQGGNVVGQVVDTMGSINESSRKIVD 360 ETASAMEE+TSTV+QN+DNARQANQLA +AS VA GG VVG+VV TM +IN+SSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS+AAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVTTVDIGSKLVAQAGSTMDEVVSSVKRVTDIVGEITAASHEQSVGLDEINRAITQMDEV 480 SV VD GSKLV +AG TM+EVV+SVKRV+DIV EITAA EQ+ G+++IN A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEEAAAAAQSLQEQASNLSQIVSVFKLDRHALPQGQTHTATASKRTVNITPEP 540 TQQNAALVE+AAAAA++LQEQA LS+ VSVF+LD +P + A ++ +ITP Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDITPAR 540 Query: 541 ASLPAKTNVKTASKTAAVKKTIASEAPAHDDAGSWEQF 578 +L S++ + + S A + G WEQF Sbjct: 541 PAL-------AQSRSKVMARPAHSNTSASAEQGDWEQF 571 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 561 bits (1446), Expect = e-161, Method: Compositional matrix adjust. Identities = 303/515 (58%), Positives = 392/515 (76%), Gaps = 1/515 (0%) Query: 1 MKWFYNLKIATKLIATFLTVIVLATGLGVFAISQLDKVNRASTDIATNWLPTIRTLAQLK 60 M WFYN +IATKL+ F V++L GLG+F+I QL KVN+A+T++ATNWLP+IR+L +K Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 FTASRIRSFEQQHILA-ADAKEFEEIEQNANRQLDALAASRKLYESQITEPEERALYPEL 119 SR+R+ + Q L D K+ + N+ L+ALA +RK Y QI+EP E+AL+P + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 GKTLDVMVAEHPRIIALSRDNKNAEARALMKGESTKSYRKAIEILDKLSAVNERGSDISN 179 +D +A H +A R K EA+ L+ G + ++Y + LDKL+ VN GS S Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 KLADDTYHNGRLWIIAMLALCIIAAMTLAIMVARIISRPLTQAVKIARQVADGDLTADIQ 239 + A+ TY ++W++A+L ++A + LA+ +AR+I+ PL A + A +A GDLTADI Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 QNSEDETGQLLGALKQMNDNLLRIVSSVRTGTDTIATASSEIATGNMDLSSRTEQQAGSL 299 S+DETGQL AL MN +L RIVS VR+GTD IATAS +I++GN+DLSSRTE+QA SL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 300 EETASAMEEMTSTVKQNADNARQANQLAASASAVAIQGGNVVGQVVDTMGSINESSRKIV 359 EETASAMEE+TSTV+QNA+NARQANQLA SAS +A +GG VV QV++TMGSI+ SS+KIV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKQLID 419 DIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+ AAKEIK LID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 420 DSVTTVDIGSKLVAQAGSTMDEVVSSVKRVTDIVGEITAASHEQSVGLDEINRAITQMDE 479 +SV V +GS LV +AG T+ EVVSSV+RVTD++ EI+AAS EQ+ G++++N+AITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 480 VTQQNAALVEEAAAAAQSLQEQASNLSQIVSVFKL 514 VTQQNAALVEEAA+A+QSL QA LS++V VF+L Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 525 bits (1353), Expect = e-150, Method: Compositional matrix adjust. Identities = 294/515 (57%), Positives = 371/515 (72%) Query: 1 MKWFYNLKIATKLIATFLTVIVLATGLGVFAISQLDKVNRASTDIATNWLPTIRTLAQLK 60 M WFYNL IA KL +F VI L G+FAI +L +VN+AS +I + W+PT+ +L+ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 FTASRIRSFEQQHILAADAKEFEEIEQNANRQLDALAASRKLYESQITEPEERALYPELG 120 + +R E + + A +E + +LDAL R ++E +++EP+E+ Y + Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KTLDVMVAEHPRIIALSRDNKNAEARALMKGESTKSYRKAIEILDKLSAVNERGSDISNK 180 K L V ++ ++ + + E RAL G+S K YR + LD + +N GS +++ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 LADDTYHNGRLWIIAMLALCIIAAMTLAIMVARIISRPLTQAVKIARQVADGDLTADIQQ 240 A + + WI+ +LA ++ A LA +VA +SRPL +AV+IA++VA GDLT I+ Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 NSEDETGQLLGALKQMNDNLLRIVSSVRTGTDTIATASSEIATGNMDLSSRTEQQAGSLE 300 DETG L+ AL+ MN++L IVS VR GTDTI TAS EIA GN+DLS+RTEQQAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEEMTSTVKQNADNARQANQLAASASAVAIQGGNVVGQVVDTMGSINESSRKIVD 360 ETASAMEE+TSTV QNADNARQANQLAA+AS +A QGG VVGQVV TM I ESSR+I D Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKQLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+ AAKEIK+LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVTTVDIGSKLVAQAGSTMDEVVSSVKRVTDIVGEITAASHEQSVGLDEINRAITQMDEV 480 SV V GS LV +AGSTM EVV+SV+RVTD+V EI+AA+ EQS G++E+N AITQMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEEAAAAAQSLQEQASNLSQIVSVFKLD 515 TQQNAALVE+AAAAA SL+ QASNL+ +V FKLD Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,235,464 Number of extensions: 38060 Number of successful extensions: 536 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 72 Length of query: 578 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 488 Effective length of database: 1,193,720 Effective search space: 582535360 Effective search space used: 582535360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)