BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0123.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311804|ref|YP_003775896.1| iron-regulated membrane protein...   444   e-126
gi|300311746|ref|YP_003775838.1| iron-regulated membrane protein...   198   6e-52

>gi|300311804|ref|YP_003775896.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 416

 Score =  444 bits (1141), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/287 (73%), Positives = 238/287 (82%), Gaps = 1/287 (0%)

Query: 1   MRAVLVLLHRWFGLGVAVFLFISGATGAIISWDHELDAALNPTLFHANSADAGTVAGAPK 60
           MRA LVLLHRWFGL  AVFLFI+G TGA+ISWDHELDA LNP LF A SA     AGAP 
Sbjct: 1   MRATLVLLHRWFGLAAAVFLFIAGLTGAVISWDHELDAWLNPQLFDARSATQ-PGAGAPM 59

Query: 61  PGLELANIVEAREPKLRVTYVMNESEPGHTSSMMVEPRLDPVTGKPYELGYNQIAVDPVT 120
           PGLELA  VE  EP+LRVTYV+ ++EPGHT  MMVEPR+DP TGK Y L YNQIAVDP T
Sbjct: 60  PGLELARRVEQAEPRLRVTYVLTQAEPGHTIGMMVEPRVDPATGKLYTLDYNQIAVDPFT 119

Query: 121 AEIQGKRMWGAISLSRENLLPFLYKLHYTMHLPDVGGIELGIWLMGIIGIVWTLDCFIAL 180
           AEIQG+RMWGAISLSRENLLPFLYKLHYTMHLPD+GG+E GI LMGIIGIVW LDC IAL
Sbjct: 120 AEIQGRRMWGAISLSRENLLPFLYKLHYTMHLPDLGGLETGILLMGIIGIVWALDCLIAL 179

Query: 181 WLSFPNRKSWRKSFAFRWKDGGHKLNFDLHRSGGVWVWGLLLVLAVTSVSMNLNNQVMTP 240
           +LSFPN +SWRKS AFRW+DGGHKLNFDLHRSGGVWVWGLLL+LAVTSVSMNL  QVM P
Sbjct: 180 YLSFPNWRSWRKSLAFRWRDGGHKLNFDLHRSGGVWVWGLLLILAVTSVSMNLERQVMRP 239

Query: 241 IIKMFSTVTPTAFDTRTPVAPDKVVEPKMSREQVTRLAMEEGKRRGF 287
           +++  ST+TP+ FDTRTP AP+KV EP+++REQ   L   + ++ G 
Sbjct: 240 LLQTLSTLTPSPFDTRTPTAPEKVAEPRITREQAVALGQAQARKMGL 286


>gi|300311746|ref|YP_003775838.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 435

 Score =  198 bits (503), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/284 (37%), Positives = 164/284 (57%), Gaps = 16/284 (5%)

Query: 2   RAVLVLLHRWFGLGVAVFLFISGATGAIISWDHELDAALNPTLFHANSADAGTVAGAPKP 61
           R VLVLLHRW GLG+A FL ++  TG+++ +D ELDA L P L  A  A   +      P
Sbjct: 19  RHVLVLLHRWTGLGMAFFLIVTSLTGSLLVFDDELDAWLAPQLQLAQPAPGQSAQAMMDP 78

Query: 62  GLELANIVEAREPKLRVTYVMNESEPGHTSSMMVEPRLDPVTGKPYELGYNQIAVDPVTA 121
            L    + +A  P++ ++ ++  + PG T S   +P  DP TGKPY LGY++I V+P T 
Sbjct: 79  YLLREKVAQAMGPQVHISQLVLHARPGRTVSFQADPATDPATGKPYRLGYDEILVNPYTG 138

Query: 122 EIQGKRMWGAISLSRENLLPFLYKLHYTMHLPDVGGIELGIWLMGIIGIVWTLDCFIALW 181
            +QG R    ISL   +L+PFL+KLH+++ LP   G      L+G +G++WTLDCF+ + 
Sbjct: 139 VVQGVRDRDKISLKPADLMPFLFKLHHSLALPRAPGAL----LLGTVGLLWTLDCFVGMI 194

Query: 182 LSFPNRK----SWRKSFAFRWKDGGHKLNFDLHRSGGVWVWGLLLVLAVTSVSMNLNNQV 237
           L++P  +     W+ ++  +W+ G +++N DLHR+ G+W W +LL+ A +SV +NL +Q+
Sbjct: 195 LTWPRARPFLVKWKPAWLIKWRAGFYRVNLDLHRAFGLWCWVMLLLFAWSSVMLNLRDQI 254

Query: 238 MTPIIKMFSTVTPTAFDTR---TPVAPDKVVEPKMSREQVTRLA 278
             P++         +FDT     P  P  +  P  S  +   LA
Sbjct: 255 YLPVMSRI-----LSFDTSWRPGPPLPQALSGPPQSWPEAHALA 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,004,976
Number of extensions: 39653
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)