BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0118.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312493|ref|YP_003776585.1| fatty acid desaturase [Herbaspi...   589   e-169

>gi|300312493|ref|YP_003776585.1| fatty acid desaturase
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  589 bits (1518), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 277/351 (78%), Positives = 309/351 (88%)

Query: 10  PVDPHAPMPHRKVIRSWLAPVVARSTPLAIALVVLDFCLFGLALAATIRVDNILAKVALG 69
           PV P APMPHRKVIRSW+ P+  RST +A+ L V+DF LFG +LAA +    +LAK+ALG
Sbjct: 28  PVAPGAPMPHRKVIRSWVIPLSKRSTAIALLLSVIDFALFGASLAAIVWAPWLLAKIALG 87

Query: 70  MLTGFIIGRLFILGHDACHQSFTANRRLNTWLGRLVFMPSLTPYSLWAVGHNVVHHGYTN 129
           ++ GFIIGRLFILGHDACHQ+FT NR+LNTWLGRL+FMPSLTPYSLWAVGHNVVHHGYTN
Sbjct: 88  VVNGFIIGRLFILGHDACHQAFTPNRKLNTWLGRLLFMPSLTPYSLWAVGHNVVHHGYTN 147

Query: 130 LKGFDFVWQPHSLQEFRALPRWRQKLERLYRSGWAPWLYYTVDMWWKKMYFPSRKQMPTR 189
           LKGFDFVWQP SL+EF ALPRWRQ+LER+YRSG+ P LYY +DMWWK+MYFPS+KQMPTR
Sbjct: 148 LKGFDFVWQPRSLEEFNALPRWRQRLERIYRSGFGPGLYYMIDMWWKRMYFPSKKQMPTR 207

Query: 190 RAEFIWDGVLVSVAATVWIGGLAWAAQSGGQSFLTLLLTAFVVPVLFWKAMIGFVVYVHH 249
           RAEF+WDG LV+  A VW+GGLAWAAQS GQSF TLL+T FV+P+LFWKAMIGFVVYVHH
Sbjct: 208 RAEFMWDGALVTAVAAVWVGGLAWAAQSTGQSFWTLLVTGFVIPLLFWKAMIGFVVYVHH 267

Query: 250 THVGVAWYQDKSEWSAAQPFVSTTVHLTFRHGIGAALHHIMEHTAHHVDMSVPLYRLKKA 309
           TH  VAWY DK  W+AAQPFVSTTVHLTF    GA LHHIMEHTAHHVDMSVPLYRLK+A
Sbjct: 268 THTSVAWYDDKVTWAAAQPFVSTTVHLTFGRFWGALLHHIMEHTAHHVDMSVPLYRLKQA 327

Query: 310 QKLLETMLPGRIVIQQFSWRWYFDTARRCKLYDFDRLCWTDFKGRPTSTPL 360
           QK LETMLPGRIVIQ+FSWRWYFDTARRCKLYDF RLCWTD++GRPTS PL
Sbjct: 328 QKKLETMLPGRIVIQRFSWRWYFDTARRCKLYDFKRLCWTDYRGRPTSQPL 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,279,026
Number of extensions: 54341
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)