BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0115.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   450   e-128

>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  450 bits (1157), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 256/308 (83%), Gaps = 9/308 (2%)

Query: 25  LRAQGFNRLSLGVQDFDPLVQRAVNRVQPEHLTLDIIKAARAQRYRSVSIDLIYGLPGQN 84
           LR QGFNR+SLGVQDFDP VQ AVNRVQ E  TL+II+AAR   +RSVSIDLIYGLP QN
Sbjct: 176 LRQQGFNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIRAARDAGFRSVSIDLIYGLPKQN 235

Query: 85  VISMAQTLGKVIQAAPDRISLYNYAHLPHLFKPQRRILDAQLPGAEAKLDMLSLAIRRLT 144
           V+SM++TL KVI A+PDRI++YNYAH+P LFK QR+I +  LP A++KLDMLSL IR+LT
Sbjct: 236 VMSMSRTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLT 295

Query: 145 DAGYVYIGMDHFALPTDDLAIAQQQGRLHRNFQGYSTHAESDMVSCGVSAISAVASTYSQ 204
            AGYVYIGMDHFA PTDDLAIAQQQGRLHRNFQGYSTH+E+D+V+CGVSAISAV  +YSQ
Sbjct: 296 SAGYVYIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQ 355

Query: 205 NVKTLEDYYDAIDRNELPIVRGLRMNMDDVLRRLIIQRLMCNFELSIASIETAYPITFAS 264
           N KTL+DYY  ++ + LPI RG+++ MDDVLRRLIIQRLMCNFELSI S+E AYPI F  
Sbjct: 356 NEKTLDDYYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFRE 415

Query: 265 YFAAELDGLRGLEQDGLVMIDDEWITVTMKGRLLVRNICMVFDRYL---------QSRPA 315
           YFA+E++ L+ LE+DGL+ I+ EWITV  KGRLL+RNICMVFDRYL         Q++ A
Sbjct: 416 YFASEMEKLKQLEEDGLIKIEPEWITVEPKGRLLIRNICMVFDRYLNQEREKAASQNKDA 475

Query: 316 EQRYSRTI 323
            QRYS+T+
Sbjct: 476 PQRYSQTV 483


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 898,564
Number of extensions: 34925
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)