BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0114.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312504|ref|YP_003776596.1| hypothetical protein Hsero_3206...   192   3e-50

>gi|300312504|ref|YP_003776596.1| hypothetical protein Hsero_3206
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  192 bits (487), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/283 (49%), Positives = 179/283 (63%), Gaps = 33/283 (11%)

Query: 8   LSLIPVFMIGLLGSVHCIGMCGGIVGAFSMAPASVRAKPFPVA--VSV------------ 53
           ++L+P+F++GL+GSVHCIGMCGGIVGA S A A VR  P P A  +SV            
Sbjct: 1   MNLLPIFLVGLMGSVHCIGMCGGIVGALSSA-APVRPTPTPAAPLLSVAAPGRNDGARLL 59

Query: 54  ----------MNSKANGALLLRTLSYNLGRIGSYAVAGALAGGLAG----GARLLAGMQA 99
                     +  +A    L+R L YNLGR+ SYA+AGALAGG+A     GA +L  +  
Sbjct: 60  RIIPIHPAGGVQVQAMAQDLVRVLCYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLAP 119

Query: 100 WQAGIHVLAQLMLVALGLYLMDAWRGLARTETVGNILWQRLRPLTDLLLPLDSPFKLVLA 159
            Q   +++  ++LV LGLYL   W  LAR E  G+ LW R+RPL   L+P+D+P K +L 
Sbjct: 120 AQRVAYLITNIVLVLLGLYLTQWWPALARLEQWGSALWVRVRPLAARLVPVDTPAKALLL 179

Query: 160 GGLWGWLPCGMVYSVLLTALLSGSAASGAAVMLAFGLGTLPVLLTAGMFGAQLRSVLQRR 219
           G LWGWLPCGMVYS LLTAL++GSA  GA  MLAFG GTLPVLL AG+ GA+LR + QR 
Sbjct: 180 GSLWGWLPCGMVYSALLTALMAGSAMQGALTMLAFGAGTLPVLLAAGLSGARLRQLAQRP 239

Query: 220 GVRVACGMVVLLFGVFGLLRAHH----GLTPDWLAALCMTPPH 258
            VR+A G+VVL FG+ GLLR       G+   W+   C++P H
Sbjct: 240 AVRLAAGVVVLAFGIMGLLRGAEIGGMGIARGWIDVFCISPAH 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 706,468
Number of extensions: 22200
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)