BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0113.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 377 e-105 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 118 2e-27 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 62 1e-10 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/407 (53%), Positives = 281/407 (69%), Gaps = 16/407 (3%) Query: 13 CFHCGLPVASDTAWRVTIDGAERAMCCPGCEAVARSIVDNGFSDYYASRSGFAATVQ-ER 71 CFHCG PV + AW + I GA R +CC GC++VAR IVD+G D+Y R+ +A V E+ Sbjct: 16 CFHCGQPVPAGQAWTLEIGGARRELCCVGCQSVARLIVDSGCEDFYLRRTAPSARVDPEQ 75 Query: 72 ELMPPELLLYDHEPVAAAGDASSAVDAHIAAAIYTVANIRCASCICLIELRLARVPGVLS 131 L P LL +P A D + A DA A + ++ +RC++C+ LIE LAR+PG+ Sbjct: 76 LLPPELALLEQPQP---APDQAHAADAS-AELVLSIDGLRCSACVWLIEKYLARLPGMQM 131 Query: 132 AEVNAVTERLHVRWRADACKPSDILAAMRAIGYPSYPYDPVRHGEHARKT---LFRQLFI 188 AE+N T RLH+R C + IL +R +GY +YP+DP+R GE AR+ LFRQLFI Sbjct: 132 AEMNVATSRLHLRRDPALCSTATILRGLRGLGYTAYPFDPLRQGEQARRASRRLFRQLFI 191 Query: 189 AGLSMMQVMMYAVPAYLAGEGGMDDDMASLMHWAALLMTLPALVYSAQPFFLGAWRDIRN 248 AGLSMMQVMMYAVP Y+ EG +D DM SLM WA+L +T+PA+ YSA PFF GAW +R Sbjct: 192 AGLSMMQVMMYAVPVYMTHEG-IDPDMMSLMRWASLFLTIPAVFYSALPFFTGAWAGLRA 250 Query: 249 RTPGMDVPVALGIAAAFAGSALATWRGESGSGSGGEVYFDSVTMFIFLLLCSRYLELTAR 308 R PGMD+PVA+GIAAAF SA+ATWRGE GE++FDSV+MFIFLLL SRYLE AR Sbjct: 251 RAPGMDLPVAIGIAAAFLASAIATWRGE------GEIWFDSVSMFIFLLLGSRYLEAAAR 304 Query: 309 RKAASALDRLQQSLPSSALRVLAYP-QPDAELVAATRLRAGDVILVRPGEALAADCIVLA 367 RK+ASAL+R+QQ+ P+SAL YP Q + LV A +LR GDVIL RPG+ +AAD +L Sbjct: 305 RKSASALERMQQAFPASALLAPGYPEQRETTLVVAAQLREGDVILARPGDTIAADACLLE 364 Query: 368 GASSVDVSLLTGESRPVHKKAGDAIPGGAINIAQALTAKVVRTAGDS 414 GA D++LL+GESRP + G PGGA+N++Q + +VVR G+S Sbjct: 365 GAGEFDLALLSGESRPQSFQIGQEAPGGAVNLSQPVFLRVVRATGES 411 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 149/302 (49%), Gaps = 26/302 (8%) Query: 107 VANIRCASCICLIELRLARVPGVLSAEVNAVTERLHVRWRADACKPSDILAAMRAIGYPS 166 + + CASC+ +E L ++PGV VN TER + A A P ++AA+ GY + Sbjct: 15 IEGMSCASCVMRVEKVLKKIPGVTEVSVNLATERASIV-TAGAVAPEQLIAAIEKAGYHA 73 Query: 167 YPYDPVRHGEHARKTLFRQLFIAGLSMMQVMMYAVPAYLAGEGGMDDDMASLMHWA---- 222 + P A KT + LS + +P LA G +HW+ Sbjct: 74 RAHLPEEAAPTA-KTALSSWWPVALSAALSLPLVLPMLLAPLG---------VHWSLPPL 123 Query: 223 -ALLMTLPALVYSAQPFFLGAWRDIRNRTPGMDVPVALGIAAAFAGS-----ALATWRGE 276 L+ P + F+ W +R R+ MD+ VALG +AA+ S L T G Sbjct: 124 WQWLLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGTSAAYGLSLWQWLTLPTMPGH 183 Query: 277 SGSGSGGEVYFDSVTMFIFLLLCSRYLELTARRKAASALDRLQQSLPSSALRVLAYPQPD 336 + + +YF+S + I L+L ++LE A+R+ A A+ L P +A RV Q D Sbjct: 184 AMAMP--HLYFESSAVVITLVLLGKWLEGRAKRQTADAIAALNALRPENA-RVRRDGQ-D 239 Query: 337 AELVAATRLRAGDVILVRPGEALAADCIVLAGASSVDVSLLTGESRPVHKKAGDAIPGGA 396 E V ++R GD++++RPGE + D +V G S +D ++LTGESRP K+AGD + G+ Sbjct: 240 IE-VPLAQVRVGDLVVLRPGERVPVDGVVREGRSHLDEAMLTGESRPQAKQAGDPLTAGS 298 Query: 397 IN 398 IN Sbjct: 299 IN 300 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 49/326 (15%) Query: 103 AIYTVANIRCASCICLIELRLARVPGVLSAEVNAVTERLHVRWRADACKPSDILAAMRAI 162 A++ + + C + LI RL+++ GV + E N + L V+ + + P ++A ++A+ Sbjct: 65 AVFFIQKMDCPTEEKLIRERLSQMSGVGTLEFNLIQRELTVQHQLPSIAP--LVATLKAL 122 Query: 163 G-YPSYPYDPVRHGEHARKTLFRQLFIAGLSMMQVMMYAVPA---YLAGEGGMDDDMASL 218 P+ D + E R + Q Y +PA L G G+ A + Sbjct: 123 DMLPAVKSDSL-DAEAGRD-----------APDQAAAYRIPARRWILLGLAGVAALGAEV 170 Query: 219 MHWAA-LLMTLPALVYSAQPFFLGA-------WRDIRNRTPGMDVPVALGIAAAFAGSAL 270 + W++ +LP + + LG W +RN + M+ ++L + A + + Sbjct: 171 LAWSSGDERSLPVIGLALAAILLGGLGTLKKGWIALRNFSLNMNFLMSLAVIGA---AVI 227 Query: 271 ATWRGESGSGSGGEVYFDSVTMFIFLLLCSRYLELTARRKAASALDRLQQSLPSSALRVL 330 W + I L + +E + +A +A+ L P A R Sbjct: 228 GQW--------------PEAAVVIVLFTLAEMIEALSLDRARNAIAGLLAMTPDMATR-- 271 Query: 331 AYPQPDA--ELVAATRLRAGDVILVRPGEALAADCIVLAGASSVDVSLLTGESRPVHKKA 388 D V A + D + V PGE + D +VL+G++S++ + +TGES PV K+A Sbjct: 272 --RGEDGVWSTVPARTVTVDDTVRVAPGERVPLDGLVLSGSTSINQAPITGESIPVQKQA 329 Query: 389 GDAIPGGAINIAQALTAKVVRTAGDS 414 GD + G IN A +V GDS Sbjct: 330 GDPVFAGTINEQGAFEMRVTAAQGDS 355 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.133 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,548,684 Number of extensions: 55183 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 4 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)