BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0112.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ...    92   2e-20
gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ...    62   3e-11

>gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score = 92.0 bits (227), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 87/166 (52%), Gaps = 14/166 (8%)

Query: 1   VFDKTGTLTVGKPALQDILPLGALSAADCLR---IAVAMERASAHPLAQTILQAAADRQL 57
           VFDKTGTLT G+P L  +      S  DC R   IA AMER S HPLA+ +++  A RQ+
Sbjct: 518 VFDKTGTLTQGRPQLTALW-----SDVDCQRSLAIAAAMERGSLHPLAKALVEEGARRQV 572

Query: 58  HDIPEAGTLRHATGQGLEATVDGVLCRLGNFAFVHALIPTASSMPAADADEHAESSYVFL 117
            D  E   L   TG G++  ++G L R+G+ +FV  L  TA   P       + +  V+L
Sbjct: 573 -DALEVEQLTSVTGAGMQGMIEGDLYRIGSRSFVAGLAGTALP-PVLLQSAASGAGSVYL 630

Query: 118 ASSNGWLARFDXIGADQRRLRAAVGTTVGAVRSRSRRRKDAGGDSP 163
            SS+GWLARFD   A    LR     TV A R+   R     GD P
Sbjct: 631 GSSDGWLARFDLADA----LRTDAVATVAAFRALGLRTILLSGDQP 672


>gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 734

 Score = 61.6 bits (148), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 2   FDKTGTLTVGKPALQDILPLGALSAADCLRIAVAMERASAHPLAQTILQAAADRQL-HDI 60
           FDKTGTLT GK  L +++   ++ A + LR+A ++E+ S H +AQ ++ AA +R L   I
Sbjct: 279 FDKTGTLTAGKARLMNMVTTPSIQADELLRLAASLEQMSNHVIAQAVVSAAIERALVLSI 338

Query: 61  PEAGTLRHATGQGLEATVDGVLCRLGNFAFV 91
           P+   ++   G GL   VDG L R+G   +V
Sbjct: 339 PD--QVQEQPGAGLSGRVDGKLVRVGAMQYV 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 568,080
Number of extensions: 22789
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)