BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0106.p
         (768 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin t...   533   e-152
gi|300312499|ref|YP_003776591.1| cbb3-type cytochrome c oxidase ...   355   7e-99

>gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  533 bits (1374), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/393 (65%), Positives = 308/393 (78%), Gaps = 7/393 (1%)

Query: 349 NIFAREIKGRYASLRWVCLWLTQLVFYGLPWLQWNGRQAVLFDLGARKFYIFGIVLWPQD 408
            I+ REI+GR+ASLRW+C++LTQLVFYGLPW+ WN RQAVLFDL +RKFY+FG+VLWPQD
Sbjct: 36  QIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQD 95

Query: 409 FIYLAALLIICAYALFLFTAVAGRVWCGFSCPQTVYTEMFLWIERRIEGTRSARMRLDRQ 468
           FI+LAALLIICA++LFLFTAVAGRVWCG+SCPQTVYTE+F+WIERRIEG RSARMRLDRQ
Sbjct: 96  FIWLAALLIICAFSLFLFTAVAGRVWCGYSCPQTVYTEIFMWIERRIEGNRSARMRLDRQ 155

Query: 469 PWGVQKLLKKSAKHIVWGALSLWTGFSFVGYFTPIHELMASVAVVSPGPWEAFWITFYSF 528
           PW   KL +KSAKH+ WGA++LWTG SFVGYF+PI +L+  ++  + GPWE+FWI FY F
Sbjct: 156 PWSFDKLWRKSAKHLAWGAVALWTGISFVGYFSPIRDLLPEISGFALGPWESFWILFYGF 215

Query: 529 ATYGNAGWMREQVCKYMCPYARFQSAMIDKDTLIITYDRARGEPRGAKSKAAQ-----KT 583
           ATYGNAGWMREQVCKYMCPYARFQSAM D+D+LIITYD ARGEPR   +KAA+     + 
Sbjct: 216 ATYGNAGWMREQVCKYMCPYARFQSAMFDRDSLIITYDVARGEPRMPAAKAAKLDTGARA 275

Query: 584 GDCIDCSMCVQVCPTGIDIRDGLQYECIGCAACIDACNGVMAKVALPPGLIRYSTEHAIT 643
           GDCIDC+MCVQVCPTGIDIR GLQY CIGCAAC+DAC+ VM K+  P GLIRYSTE+A+ 
Sbjct: 276 GDCIDCTMCVQVCPTGIDIRQGLQYMCIGCAACVDACDSVMDKIKRPRGLIRYSTENAVE 335

Query: 644 SHLSLQEMRRRVLRPRVLAYTALLVLIVAGFGTALALRTPLXGRDGARSRGRHDRE-RLP 702
              S  E+RRR++RPR+L Y A+L  ++A F  +L +RTPL   D  R RG   RE    
Sbjct: 336 QGFSTAEIRRRLVRPRILIYGAILGAVIALFAGSLWVRTPLK-LDVIRDRGSMGREVEEG 394

Query: 703 AADHEHRRDRASLPYRRVRYRRHQAGDAGGSRD 735
             ++ +R    +   R  RY     G AG S D
Sbjct: 395 IIENVYRLQIINTDERGHRYLVRAKGLAGLSVD 427


>gi|300312499|ref|YP_003776591.1| cbb3-type cytochrome c oxidase
           subunit III transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score =  355 bits (911), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 162/251 (64%), Positives = 199/251 (79%), Gaps = 2/251 (0%)

Query: 1   MSDFTSEFWNLYIAGLTIISIIGCGVLLWSQSKVKVEKKPGQDPSTVGTTGHVWDVDLTE 60
           M+DFT+ FWN++I  LT++ I+GC +LLW QS  KV+K  G++ +   TTGHVWD DLTE
Sbjct: 1   MADFTNGFWNIWIIVLTVLGIVGCTLLLWQQSNWKVKK--GEEKAAGSTTGHVWDEDLTE 58

Query: 61  LNTPMPRWWMWLFYLTIVFALAYLFLYPGLGSYAGKLGWKSSEAYQRELSKADADYGPLF 120
           LN P+PRWWMWLFYLTI F++ YL  YPGLG+  G LGW+S+  +  ++  A+A YGPLF
Sbjct: 59  LNNPLPRWWMWLFYLTIFFSIGYLVAYPGLGNLPGTLGWRSTGEHDADVKAAEAKYGPLF 118

Query: 121 EKYLQQDIRTVAADPQAHVIGERLFLTYCAQCHGSDARGSKGFPNLTDKDWLYGGDPEVI 180
             YL+QD++ VA D QAH IGERLFLTYCAQCHGSDARG+KGFPNLTD DWL+GG PE+I
Sbjct: 119 NHYLKQDLKVVAGDSQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEII 178

Query: 181 RTTILHGRNGQMPSMAAALGSDKDVENVAHYVLSLSDSTHDPIKAVFGKSKFAVCAGCHG 240
           + TI+ GR+G MP MAAA+G+DKDV+NVA+YVLSLSDSTHDPIKA  GKSKFA C  CHG
Sbjct: 179 KETIMKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSDSTHDPIKAELGKSKFAACMACHG 238

Query: 241 AGXPGHRQPGA 251
            G  G++  GA
Sbjct: 239 PGGKGNQALGA 249



 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 134 DPQAHVIGERLFLTYCAQCHGSDARGSK--GFPNLTDKDWLYGGDPEVIRTTILHGRNGQ 191
           DP    +G+  F   C  CHG   +G++  G PNL+DK WLYGG  + I+ TI  GR+  
Sbjct: 219 DPIKAELGKSKFAA-CMACHGPGGKGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNT 277

Query: 192 MPSMAAALGSDKDVENVAHYVLSLSD 217
           MP+    LG  K V  +A YV SLS+
Sbjct: 278 MPAFGEFLGEPK-VHVLAAYVWSLSN 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,309,753
Number of extensions: 95378
Number of successful extensions: 362
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 3
Length of query: 768
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 675
Effective length of database: 1,179,515
Effective search space: 796172625
Effective search space used: 796172625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)