BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0103.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   305   2e-84
gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   261   2e-71
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   153   7e-39

>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  305 bits (781), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 142/198 (71%), Positives = 169/198 (85%)

Query: 1   VARGESLYRMDDPFRNLYAIRLGHFKTYQLNAGGEQQITGFQMAGELMGMDAISTDKHHC 60
           VAR + LYR+ D F  LYA+R+GHFKTYQ N  G++QITGFQM GEL+GMDAIST++H C
Sbjct: 72  VARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQC 131

Query: 61  DVAALEDSEVCEIPFQRLEELFGVIPMLLRHFHRIMSQEITREQNAMLLLGNMRAEQRFA 120
           D  AL+DSEVCEIPF RLE+LFG IP LLRHFHRIMS EIT EQN ++LLGNMRAEQRFA
Sbjct: 132 DAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFA 191

Query: 121 AFLINLSSRYAARGYSSTSFQLRMSREDIGNYLGLTIESISRLVSKFRKLGWLGVDKREI 180
           AFL+NLSSRYAARGYSST FQLRM+R+D+GNYLGLTIESISRL+SKFRK G L V++R++
Sbjct: 192 AFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDV 251

Query: 181 QLLDPVRIKALAAGTETC 198
           +++D   +K LAAG + C
Sbjct: 252 EVVDLAALKRLAAGVDAC 269


>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  261 bits (668), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 155/198 (78%)

Query: 1   VARGESLYRMDDPFRNLYAIRLGHFKTYQLNAGGEQQITGFQMAGELMGMDAISTDKHHC 60
           V R E+LYR++D F  LYAIRLGHFKT+Q N  G QQITGFQMAGEL+GMDAI    H C
Sbjct: 57  VKRDETLYRLNDKFDMLYAIRLGHFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLC 116

Query: 61  DVAALEDSEVCEIPFQRLEELFGVIPMLLRHFHRIMSQEITREQNAMLLLGNMRAEQRFA 120
           +  ALEDSEVCEIPF  LE+LF  +P LLR FHR+MS EI+REQ  ML LG+M A+Q+ A
Sbjct: 117 EAVALEDSEVCEIPFASLEDLFRDMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMA 176

Query: 121 AFLINLSSRYAARGYSSTSFQLRMSREDIGNYLGLTIESISRLVSKFRKLGWLGVDKREI 180
           AFL+NLSSRY +RGYSST FQLRM+RE+IGNYLGL +ES+SRL++ F+K G + V+ R++
Sbjct: 177 AFLLNLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDV 236

Query: 181 QLLDPVRIKALAAGTETC 198
           +L D   ++A+A G + C
Sbjct: 237 ELCDLPTLRAVALGNDPC 254


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  153 bits (387), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 120/194 (61%), Gaps = 1/194 (0%)

Query: 4   GESLYRMDDPFRNLYAIRLGHFKTYQLNAGGEQQITGFQMAGELMGMDAISTDKHHCDVA 63
           GE  YR  D    ++ +RLG FKT +++  G   +  F   G+L+G++  S   +  D  
Sbjct: 53  GEFAYRAHDECSKIFIVRLGSFKTVRVSRYGGMDVIAFHHTGDLLGIEGASHSAYEVDTI 112

Query: 64  ALEDSEVCEIPFQRLEELFGVIPMLLRHFHRIMSQEITREQNAMLLLGNMRAEQRFAAFL 123
           ALEDS++CE+ F  LEEL   IP L +   R +S E+T  Q   LLL   R+EQRFA FL
Sbjct: 113 ALEDSQICELSFVGLEELSRKIPRLHQQVWRRLSNEVTLMQQQSLLL-KARSEQRFAFFL 171

Query: 124 INLSSRYAARGYSSTSFQLRMSREDIGNYLGLTIESISRLVSKFRKLGWLGVDKREIQLL 183
           ++LS   +  G +ST F LRMSR DIG +LGLT ES+SRL+SKFRK G + V  R++++L
Sbjct: 172 LDLSRISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRLISKFRKAGLIDVSVRKVRVL 231

Query: 184 DPVRIKALAAGTET 197
            P  ++ LA+G  +
Sbjct: 232 SPSTLEELASGATS 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 572,018
Number of extensions: 20987
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)