BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0097.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309862|ref|YP_003773954.1| hypothetical protein Hsero_0527...   311   8e-86

>gi|300309862|ref|YP_003773954.1| hypothetical protein Hsero_0527
           [Herbaspirillum seropedicae SmR1]
          Length = 528

 Score =  311 bits (796), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 180/460 (39%), Positives = 270/460 (58%), Gaps = 18/460 (3%)

Query: 14  WQSKSNDAVSTMMAGNFSSSSLGARFKGLGAALLNRFDSDSGXG------GAGTPKGS-A 66
           W+ + +D +S  +A N ++S    R+ GLG ALL++    S          A   +G   
Sbjct: 71  WEQRQDDPLSARLARNLAASDTAGRWSGLGKALLDQASVSSSVYSQSVLLSATAAQGDDG 130

Query: 67  LETTLRAQTDAQTDNKISLTIVTTSGAQVELTLSSQEDGLSVQVQVGKGKLTDAERGALQ 126
           +   LR Q       +I+LT+ T +GA++++ L +  +G++V  +V +G L+D +R A+ 
Sbjct: 131 VHAILRDQLHRFASQRIALTLTTNAGARIDVQLGANAEGVAVDFKVSQGSLSDEDRAAVT 190

Query: 127 KLSDGFQSAIDGIAANPPGLKLDGLTQFDTSLLASVDLHASVQVGGQTQTIGFHADSKQR 186
            L + F  AI G+A  PP L LD L QFDT  LA++D  A++   G   ++    D  QR
Sbjct: 191 ALGEAFDQAIQGLAGRPPTLALDKLMQFDTHQLAALDFTATL---GDDLSLQLQIDGSQR 247

Query: 187 TVSAAGPAGTLKVSVDLSNLAIVGTAKQQAEAIKRYLKQFDDAQSRGHGDASLVAMFKDA 246
           +V+A   AG +KV +D +   + G+A+Q+  AI  YL+QFD A  RG GDA L+A+FKDA
Sbjct: 248 SVTAHTAAGAMKVGLDATAAPVTGSAQQRQRAIASYLEQFDAAARRGQGDAGLMALFKDA 307

Query: 247 FKEMNSKVTSAAQQAREQSPAAIWLNKADQSMTTGLADFNASMTQEVTSPNPARQSEHDT 306
           F ++++  T+  Q   + +PA +  +  D+ M +GL DF+AS+T     PNP R+ E D 
Sbjct: 308 FAQLHASATAPVQ---DHTPALLAADATDRGMLSGLGDFSASITGNSAWPNPLRRDEVDG 364

Query: 307 FSYQTSQSSNVGSNGGGQLNRAITQQQESHLSASYHESLLADVPLRLTTDKNSQNYTYHQ 366
           F YQ SQ +++  +G GQ +R+I QQ +S L ASYH+SL  D+PL+L + + SQNYTYHQ
Sbjct: 365 FDYQVSQRTSL--SGAGQADRSIVQQAQSRLKASYHQSLQPDLPLQLDSTRQSQNYTYHQ 422

Query: 367 IKDDASSKATIAYDKGVLVKATLEQSASQSTRVQKYMMGELISDNTTPQNATLSRDFLSL 426
           I D A S+  I Y +G + +A L QSASQ +RV KY++GEL+S   TP  A + RDF + 
Sbjct: 423 IDDRADSQLEIGYRQGFMTQARLRQSASQDSRVSKYVLGELVSQTHTPLQAQIVRDFAAQ 482

Query: 427 LKPLQKKEGATSAADISALDQALATINNLVYLQPDPLTLR 466
           L+  ++   A  A   S L   L  I+ L  LQ DP  +R
Sbjct: 483 LQDGKEARAADGAYRRSRL---LDGISELGLLQSDPQRVR 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.123    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,288,341
Number of extensions: 48549
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 132 (55.5 bits)