BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0092.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehy...   280   7e-77

>gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  280 bits (716), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 159/211 (75%), Gaps = 10/211 (4%)

Query: 30  ARGYAERLEWLAPYG----------ASXDGLAAHVEAVCKSVKFGVIVYNRGQCRLTPAT 79
           A  YA+  E L  +G          AS DG+AAHVEAVCKSVKFGVI+YNR  C+L   T
Sbjct: 96  AIAYAQEAERLGAHGILLMPHYLTEASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADT 155

Query: 80  LARLAERCPNLVGFKDGIGDIELMSSIYMKMGDRFAYLGGLPTAEVYAAAYKALGTPVYS 139
           L +LA+RCPNL+GFKDGIG+IE M  I  K+GDRF YLGGLPTAEVYAAAYKALG PVYS
Sbjct: 156 LQKLADRCPNLIGFKDGIGEIEPMVHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYS 215

Query: 140 SAVFNFIPKTAMEFYHAVAADDLATQHHLLREFFMPYLEIRNRMQGYAVSIVKAGARLVG 199
           SAVFNFIPKTA+EFY A+A +D  T   L+ EFF+PYL IRNR  GYAVSIVKAGAR+ G
Sbjct: 216 SAVFNFIPKTAVEFYQAIAKEDHDTVGKLIDEFFLPYLAIRNRKAGYAVSIVKAGARIAG 275

Query: 200 HDAGPVRAPLTDLNAAECEALGALIAKLGPQ 230
           HDAGPVR PLTD    E E L AL+ KLGPQ
Sbjct: 276 HDAGPVRTPLTDCTPEEHEELAALMNKLGPQ 306



 Score = 77.8 bits (190), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 37/45 (82%)

Query: 2  TPQELKTIMGSGLLSFPLTDFDANGDFNARGYAERLEWLAPYGAS 46
          TPQ+LK I+ SGLLSFPLTDFD  GDF  + Y ERLEWLAPYGAS
Sbjct: 5  TPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGAS 49


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 761,984
Number of extensions: 31770
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)