BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0091.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar ep...   207   5e-55

>gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  207 bits (526), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%)

Query: 35  GYYGLSKSYGEDMAQFNYDRYGIETVSIRIGWSFPEPKDRRSLASWLSYDDLTELMRCCL 94
           GYYGLSKSYGEDMAQF +DRYG+ETVSIRIG  FPE  +RR LASW+S DD  +L+R  L
Sbjct: 150 GYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATNRRMLASWMSMDDFEQLLRRSL 209

Query: 95  FTPDVGHTVVYGMSDNPSTWWDNHYAAHLGFKARDTSEIFRAKIEAQPLPPADDPVRVYQ 154
           F PDVGHT+VYGMS N  TWWDN YAAHLG+  +D+SEIFRAK+EAQP+P  DDPV   Q
Sbjct: 210 FIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEIFRAKVEAQPMPAPDDPVLTLQ 269

Query: 155 GGIFTMTGPFEP 166
           GG FT  GPF+P
Sbjct: 270 GGAFTTAGPFDP 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 454,714
Number of extensions: 17082
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)