BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0089.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 365 e-102 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 232 2e-62 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 215 2e-57 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 194 5e-51 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 189 2e-49 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/279 (69%), Positives = 219/279 (78%), Gaps = 20/279 (7%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M F+L+F+PLAPYWPVFL GAWLTLKMTT+A++VGVAIG +AF K + ++A+ CSAY Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 IE VRNTPFLVQIFLLYFGLASLGI MPTFAAAVLAMIINIAAYAAEIIRAGL+SVP+GQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+CLGLS WRI WHVMLQP+IERVYPALTSQFLLMMQASAMASQISAEELTAIANTV Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFK------------RRRIIRR--- 225 QSDTFRSLETY+VVA +YL L+ILVKL+A+ GE +FK RR + R Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGRRTPVSRLPA 240 Query: 226 ---AALEAARRRPPAIPPFQPVAATAAATAANTTNGSAS 261 AA+ P P +PVA AA+ GSAS Sbjct: 241 TDPAAMAPLAHVPYVHPASRPVAVNTAASL--RIEGSAS 277 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 232 bits (592), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 112/221 (50%), Positives = 155/221 (70%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M +T +F + W L GAWLT++++ ++IV+G A+GTL A + + AY Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTP LVQ+FL++FGLAS+G + AAV+A+ +N+ AY EI+RAG+ S+ GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAAECLG+SR+ + WHV+L P++ERVYP+LTSQF+L+M AS++ SQISAEELTA AN V Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 QS+TFRS E Y V+A YL LS L + W + F R+R Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKR 221 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 215 bits (548), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 106/221 (47%), Positives = 157/221 (71%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M + +FA +A +WP+ L GAW T++++ +A ++G +G A + + ++ A S Y Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTP L+Q + L FGL+S+G+ MP A A LA++INI AY+ EI+RAGLES+ GQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAA CLGLS ++ WHV+L P++ERV+PALTSQF+LMM AS++ S + AEEL +AN V Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 QSDTFR+ E ++++ YLAL+ L++ W G+ +F RRR Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRR 221 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 194 bits (494), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 157/223 (70%), Gaps = 4/223 (1%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLK-RGSNPYIAK-ACS 58 M + FA + + L GA LT++++ ++++ G+A+G A + GS P A+ A + Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKP--ARLAVT 58 Query: 59 AYIEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPK 118 +Y+E +R+TPFLVQ+F+++FGL S+G+ + AA++AM +N+ AY+ EI+RAG+ ++ Sbjct: 59 SYVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHP 118 Query: 119 GQIEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIAN 178 QIEAA+ L ++RW++ HV+L P++E+VYPAL SQF LMM AS++ S ISAEELTA AN Sbjct: 119 SQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATAN 178 Query: 179 TVQSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 + ++TFRS E Y+VV +Y+ L++L +L W G +FKRRR Sbjct: 179 LLDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRR 221 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 146/221 (66%) Query: 1 MGFTLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVAIGTLIAFLKRGSNPYIAKACSAY 60 M + +F Y V + G T+++ + V+GVA+G A+ + ++ S Y Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTPFLVQ+F ++FGL SL IH+ AA++AM+IN+ AY+ EIIRAG++++P+GQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+ L +SR +I H++L+P++++++PAL+SQ +++M SA+ SQI+ EEL+ AN + Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 Q FR+ E YIV +YL L+IL++ + G Y RR Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 547,126 Number of extensions: 16716 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 21 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)