BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0088.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 365 e-102 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 253 7e-69 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 250 6e-68 gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 194 4e-51 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 117 1e-27 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/217 (82%), Positives = 198/217 (91%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 M+G FSW +F ++VQSI WTLVLS LAF+LG GGF VMLARISP WL P +++IEC+ Sbjct: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QGIPLLILLFIVYFGLSVYG LPALVAAGLAMM+YTSAYLGDIWRGCVEAMPRPQWEA+ Sbjct: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 ECLSLTRWQTLRLVIIPQA RLSLPPT+GFLVQ+IKMTSLASVIGF+ELTRAGQIINNSI Sbjct: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 FQPFL+F LVG+FYF+LCYPLSRWS SME KLNVS+R Sbjct: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 253 bits (647), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 117/216 (54%), Positives = 168/216 (77%) Query: 1 MIGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECI 60 M+ FS+ +F++L+++ WTL+LS LAF+ G I GF V L R S L + + VYI+ I Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAA 120 QG P+LILLF+ ++GL+++G+ LP +VAA +AM +Y+SAYLG+IWRGC+EA+P PQWEA+ Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSI 180 L++TRWQ LR VI+PQA R+SLPPTVGFLVQ++K TS+AS+IG +EL +AG++++N+ Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FQPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSN 216 FQPFL+F +V YFV CYPLSR++ ++E K + Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 250 bits (639), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 117/216 (54%), Positives = 162/216 (75%) Query: 2 IGSFSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQ 61 + +FS+ H YL+Q+ WT+VLS +AF+ G + GF + L R+SP L YI+ +Q Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 62 GIPLLILLFIVYFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAE 121 GIPLL++LF+ YFGL++ GF L LVAAG++ +Y +A+LG+IWRGC++A+P+ QWEA+E Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 122 CLSLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIF 181 CL R++ L VI+PQA +++ PPTVGF+VQ++K TSLASVIGF++L+RAGQIINNS F Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 182 QPFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 QPF +F V YF LC+PLS S+ E KLNVS+R Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 194 bits (493), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 106/215 (49%), Positives = 150/215 (69%), Gaps = 2/215 (0%) Query: 5 FSWGHFLYLVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQGIP 64 S L L+Q W T++LSGL +LG + G + LAR+S R L +I+ IQG P Sbjct: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 Query: 65 LLILLFIVYFGLSVYGFA-LPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAECL 123 LL+L+ + ++G ++ G + AL AA AM++YTSA+LG+IWRGC++++ + QWEAAEC+ Sbjct: 61 LLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAFLGEIWRGCIQSVHKSQWEAAECI 120 Query: 124 SLTRWQTLRLVIIPQAFRLSLPPTVGFLVQVIKMTSLAS-VIGFIELTRAGQIINNSIFQ 182 L+RWQ +R++++PQA R++ PPTVGF VQVIK TS+AS VIGF EL+ +++NNS FQ Sbjct: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 Query: 183 PFLIFSLVGAFYFVLCYPLSRWSESMENKLNVSNR 217 PFL F YF +CYPLSRWS ++E KL+ R Sbjct: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 113/205 (55%) Query: 13 LVQSIWWTLVLSGLAFILGSIGGFGVMLARISPRRWLWMPTLVYIECIQGIPLLILLFIV 72 L + + +TL+ + + + G + GF + +ARI P R + P +Y+ ++G PLL+ +F+V Sbjct: 16 LAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVV 75 Query: 73 YFGLSVYGFALPALVAAGLAMMVYTSAYLGDIWRGCVEAMPRPQWEAAECLSLTRWQTLR 132 Y+GL G L A L + + SAYL + RG + + R QW AA + LT +QTLR Sbjct: 76 YYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLR 135 Query: 133 LVIIPQAFRLSLPPTVGFLVQVIKMTSLASVIGFIELTRAGQIINNSIFQPFLIFSLVGA 192 +I+PQA R+++P L+ +IK TSL SVI EL A + + F+P ++ A Sbjct: 136 YIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAA 195 Query: 193 FYFVLCYPLSRWSESMENKLNVSNR 217 Y++L +E KL +++ Sbjct: 196 IYWMLSLCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.144 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 684,323 Number of extensions: 27738 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 19 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)