BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0087.p (529 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312409|ref|YP_003776501.1| leucyl aminopeptidase [Herbaspi... 634 0.0 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 157 3e-39 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 124 2e-29 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 113 3e-26 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 95 1e-20 >gi|300312409|ref|YP_003776501.1| leucyl aminopeptidase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/386 (82%), Positives = 348/386 (90%), Gaps = 3/386 (0%) Query: 102 DALVALPLDKIKGREGKDIAWAIRALVLAARDNNYRSDVLKSKKDPAPTGVKKIAVAVST 161 DA +ALP D +KGR D+ W IR +VLA RD YRSD +KSKKDPAPTGVKK+ + V Sbjct: 109 DAALALPFDGVKGR---DLTWTIRNVVLAGRDAVYRSDTMKSKKDPAPTGVKKVTLLVPA 165 Query: 162 AAAVAAKTGLAEAVALANGMELSKDLANLPGNVCTPTYLANSAKKLAKEYKLGVEVLDRK 221 + +V AK LAEAVALANGM L+K+L NLPGNVCTPTYLAN+AKKLAK++ LGVEVLDRK Sbjct: 166 SDSVTAKAALAEAVALANGMALTKELGNLPGNVCTPTYLANTAKKLAKQFGLGVEVLDRK 225 Query: 222 QLEALKMGSFLSVTNGSDEPPKFIVLKHLGGKSKDAPIVLVGKGITFDTGGISLKPGAGM 281 QL+ALKMGSFLSVTNGSDEPPKFIVLKH+GGK+KDAP+VLVGKGITFDTGGISLKPG M Sbjct: 226 QLQALKMGSFLSVTNGSDEPPKFIVLKHMGGKAKDAPVVLVGKGITFDTGGISLKPGLNM 285 Query: 282 DEMKYDMCGAASVLGTFRAIAELQLKLNVIGVIPTCENMPSGRATKPGDIVTSMSGQTIE 341 DEMKYDMCGAASVLGTFR IAEL LK+NVIGVIPTCENMPSGRATKPGDIVTSMSGQTIE Sbjct: 286 DEMKYDMCGAASVLGTFRTIAELGLKMNVIGVIPTCENMPSGRATKPGDIVTSMSGQTIE 345 Query: 342 VLNTDAEGRLILCDALTYVERFKPAAVVDIATLTGACVVALGHHNTGLFTREDDAHDQLA 401 VLNTDAEGRLILCDALTYVERFKPAAVVDIATLTGAC+VALGHHN+GLFTRED+AHD LA Sbjct: 346 VLNTDAEGRLILCDALTYVERFKPAAVVDIATLTGACIVALGHHNSGLFTREDEAHDALA 405 Query: 402 NDLLAAGKASGDTAWRMPVQDVYQEQLKSNFADIANIGGQPAGSVTAACFLERFTKKYTW 461 N LLAAG+ SGDTAWRMP+Q+VYQEQLKSNFADIANIGGQPAGSVTAACFLERFT+KYTW Sbjct: 406 NALLAAGRDSGDTAWRMPIQEVYQEQLKSNFADIANIGGQPAGSVTAACFLERFTRKYTW 465 Query: 462 AHLDIAGTAWRGGATMTCSGRGVPEL 487 AHLDIAGTAW+ GA +GR VP L Sbjct: 466 AHLDIAGTAWKSGAAKGATGRPVPLL 491 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 74/85 (87%), Positives = 80/85 (94%) Query: 4 IVKLDQIYKSFGSNQVLKGVSFEVQKGEMIAIIGASGSGKSTALRCIDRLEKIDSGAIEV 63 IVKLDQ+YKSFG NQVLKGVSFEV +GEMIAIIGASGSGKSTALRCIDRLE IDSG+IEV Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 64 CGMRVDDPAIDLHKLRQEVGIVFQS 88 G+RVDDP +DLHKLR+EVGIVFQS Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQS 110 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 23/219 (10%) Query: 1 MSAIVKLDQIYKSFGSNQVLKGVSFEVQKGEMIAIIGASGSGKSTALRCIDRLEKIDSGA 60 MSAIVK+ ++KSFGSN+VL GVS +VQKG+M+AIIG SGSGKST LRC++ LEK+D+G Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 IEVCGMRVDDP-AIDLHKLRQEVGIVFQSXHKLRQEVGIVFQDALVALPLDKIKGREGKD 119 I+VCG + P ++L +LR++VGIVFQS + L + + L + K+ + K Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQS-YNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 120 IAWAIRALVLAARDNNYRSDVLKSKKDPAP---TGVKKIAVAVSTAAAVAAKTGLAEAVA 176 IA + LV L++KKD P +G + VA++ + A+A + L + V Sbjct: 120 IAHKVLQLV-----------GLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVT 168 Query: 177 LANGMELS-------KDLANLPGNVCTPTYLANSAKKLA 208 A EL+ +DLA + T+ A+KLA Sbjct: 169 SALDPELTAEVLKVMEDLARGGMTMVLVTHEMAFARKLA 207 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 53/87 (60%), Positives = 69/87 (79%) Query: 1 MSAIVKLDQIYKSFGSNQVLKGVSFEVQKGEMIAIIGASGSGKSTALRCIDRLEKIDSGA 60 M +V+L ++K FGSN VL+GVSF+V +GE++AIIG SGSGKSTALRCI+RLE+ID+G Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 IEVCGMRVDDPAIDLHKLRQEVGIVFQ 87 I VCG + +DL LR++VGIVFQ Sbjct: 61 ISVCGHALHAAGLDLRGLRRDVGIVFQ 87 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/84 (54%), Positives = 63/84 (75%) Query: 4 IVKLDQIYKSFGSNQVLKGVSFEVQKGEMIAIIGASGSGKSTALRCIDRLEKIDSGAIEV 63 IV+++ I K FGSNQVL G+S V++G+++AIIG SGSGKST LRCI+ LE ID G+I V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 CGMRVDDPAIDLHKLRQEVGIVFQ 87 G ++ L +LR++VG+VFQ Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQ 86 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,663,989 Number of extensions: 73074 Number of successful extensions: 420 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 416 Number of HSP's successfully gapped: 25 Length of query: 529 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 439 Effective length of database: 1,193,720 Effective search space: 524043080 Effective search space used: 524043080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)