BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0080.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...   291   4e-80
gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...    78   9e-16

>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  291 bits (746), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 161/277 (58%), Positives = 195/277 (70%), Gaps = 6/277 (2%)

Query: 50  GTDPDSGLDCVVGTAQAGVVXGRVVGTAQAGVVIGLLLARTLAGMIADVAGWRMVYAVSA 109
           GT    GL     +A      GRVVG AQ+GV IGLLL+R  +G ++DV GWR VY  +A
Sbjct: 113 GTAMTQGLIAYAASAAGEDERGRVVGAAQSGVFIGLLLSRVFSGAVSDVTGWRGVYLCAA 172

Query: 110 VLALLMLALLHGRLPHRP--ADGGAARLSYGQLLASMATLMLHDRVLQIRGVIAMLMFAV 167
           ++ L +   L  RLP  P  ADG    L Y  L+ SM  L+  D+VLQ+RGV+AMLMFA 
Sbjct: 173 IMMLCLAWPLWKRLPAIPVQADG----LRYLTLIKSMWCLLRDDKVLQVRGVLAMLMFAA 228

Query: 168 LNIFWSALVLPLRAPPYSLSHAAIGAFGLIGVVGTLGAAKAGSWADRGRGQWTSGVALAL 227
            N+FWSALVLPL A PY  SH  IGAFGL+GV+G L A+KAG W+D+G  Q TS V+LA+
Sbjct: 229 FNVFWSALVLPLSASPYHFSHTVIGAFGLVGVIGALAASKAGRWSDQGHAQRTSAVSLAV 288

Query: 228 LATAWLPLSLLSWSLWALAAGVLLLDLAAQAIHVTNQSMIFRASATAHSRLVACYMIFYA 287
           L  AW PLSL+  SLWAL AG++LLDL  QA+HVTNQS+IFR+S  AHSRLV  YM+FYA
Sbjct: 289 LLLAWWPLSLMESSLWALVAGIILLDLGGQALHVTNQSLIFRSSPQAHSRLVGVYMLFYA 348

Query: 288 VGSGAGAVSSTAAFAAWGWAGVCMLGAGVSVLGLLFW 324
           VGSG GA+S+TA +AA GW GVC LGA VS + LLFW
Sbjct: 349 VGSGLGAISTTAIYAARGWQGVCFLGAAVSFIALLFW 385


>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score = 78.2 bits (191), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 16/245 (6%)

Query: 71  GRVVGTAQAGVVIGLLLARTLAGMIADVAGWRMVYAVSAV-LALLMLALLHGRLPHRPAD 129
           GRVVGT   G+++G+LL+R ++G +A+  GWR ++  +AV +AL+ LA   G     P  
Sbjct: 148 GRVVGTVMTGLLLGILLSRVVSGFVAEHFGWRAMFVAAAVSIALIGLAAWRGLPRFHPTT 207

Query: 130 GGAARLSYGQLLASMATLMLHDRVLQIRGVIAMLMFAV-LNIFWSALVLPLRAPPYSLSH 188
                LSYG L+AS+ATL      L+ R  +A  + +V  + FWS L + L   P+ L  
Sbjct: 208 ----HLSYGALMASLATLFKKHGALR-RAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGS 262

Query: 189 AAIGAFGLIGVVGTLGAAKAGSWADRGRGQWTS--GVALALLATAWLPLSLLSW-----S 241
           AA GAFGL G  G L A  AG  +D+   +  +  GV LA+++ A + LS   W      
Sbjct: 263 AAAGAFGLAGAAGALAAPLAGRISDKKGPELVTRLGVGLAIVSFAAMALS--PWFSTQGQ 320

Query: 242 LWALAAGVLLLDLAAQAIHVTNQSMIFRASATAHSRLVACYMIFYAVGSGAGAVSSTAAF 301
           L  LA   +  DL  QA  V +Q++++     A SRL A   +   +G  AGA   +   
Sbjct: 321 LVLLAVAAVGFDLGVQATLVAHQTIVYSIEPGARSRLNAILFVGMFIGMAAGAALGSLVL 380

Query: 302 AAWGW 306
           A WGW
Sbjct: 381 AQWGW 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,722
Number of extensions: 28549
Number of successful extensions: 251
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)