BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0074.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311585|ref|YP_003775677.1| Ku domain-containing protein [H...   408   e-115

>gi|300311585|ref|YP_003775677.1| Ku domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  408 bits (1048), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/272 (70%), Positives = 232/272 (85%), Gaps = 1/272 (0%)

Query: 1   MRRALWKGAISFGLINIPVELFTAEKHDELDFTMLDKRDLSPVGYKRISKKTGKEVVWDN 60
           MRRALWKGAISFGLINIPVEL+TAEKHDELDFT+LD+RDLSPVGYKR +KK+G+EV W+N
Sbjct: 1   MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60

Query: 61  IVKGYEYEDGKYVLLSDEDLRRANVEATQTIDIESFIDATQIPITYYEQPYYLAPLKSGA 120
           I+KGY+YE+GKYVL+SDEDLRRANVEATQ+IDI+SF++  Q+PI YYEQPY+LAP K G 
Sbjct: 61  IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120

Query: 121 KAYALLRETLRKSGKIALARIVIRTRQHIAALTPFDDIINLITLRYPAELRAPDDLPVPD 180
           KAYALLRETL  S K+A+A+IVIRTRQH+AAL P  D++ LITLRYP+ELRAPDDLPVP 
Sbjct: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180

Query: 181 ANPKKAGLSAKEVEMAQSLVESMSGDWDPESLRDTYRDDILALVQKKIRSRQTHEIAEPE 240
              KKA ++ +EVEMA++LVE MS  W+PE   DTYRDD+LAL+QKK +SRQTHE+AEP+
Sbjct: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKTKSRQTHEVAEPD 240

Query: 241 PEDDGKPRSSAKVIDLMALLKQSIDGKGKRPA 272
                   S AKV+DLMALLK S++G+G+  A
Sbjct: 241 EAAAPAS-SGAKVVDLMALLKSSLEGRGRSSA 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,102,258
Number of extensions: 41626
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)