BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0072.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313066|ref|YP_003777158.1| drug/metabolite transporter (DM...   100   2e-22

>gi|300313066|ref|YP_003777158.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 1/237 (0%)

Query: 3   PIWSTAIRSCIGTVVLLILCLARGRLVLPQRGDLPVVFSVGLLHMTAYSILGNVGMQHVA 62
           P+W  A R     ++  ++ +  G+L LP R + PVV  VG+L M  ++ L    +  V 
Sbjct: 58  PLWFAASRFLSAAILSFVIAVVLGKLRLPTRQEWPVVVGVGVLQMGLFTALVTGALHFVM 117

Query: 63  AGRSVVLAYTTPMWVAPCARLFLGEAFTLRRAIGTVFGLFGLVLIFNPLAFDWSNHDSVL 122
            GR+ ++AY T +WV P A L L +  + ++++ TV    G+ +I  P A   ++  S++
Sbjct: 118 PGRASLIAYATSIWVVPGAALVLKQKLSPQQSLATVCSYAGMAVIVLP-ALLHADLHSMI 176

Query: 123 GNGLILLGAMFWAASILYVRGHRWIGEPFDLLVWQALTASCVLVPCAWLFEGPPQLDLSA 182
           G  ++ + ++ WA +IL ++    +   F LL WQ L A+  L   A   +G P      
Sbjct: 177 GYLMLGVASLSWAMNILQIKMSPGVKLDFALLPWQTLVAALPLSLLALAVDGAPSFLADP 236

Query: 183 QVIGLQLYSATFGIAIAYWAINKVNHSLPAMTTSLGLLGVPVFGIVCSSLALGETLE 239
              G+  Y+     A+ +  + ++   L  +T S+ +LGVPV G+  SSL  GE L 
Sbjct: 237 HAWGVIAYTGPLATALTFLIVLQMTQRLSPVTVSVCMLGVPVVGLTLSSLVFGERLS 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 861,392
Number of extensions: 37996
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)