BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0071.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310940|ref|YP_003775032.1| acetyltransferase [Herbaspirill...    80   1e-16

>gi|300310940|ref|YP_003775032.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 195

 Score = 80.1 bits (196), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 1   MYGRYCRVEPIRPAHADQLFDANGDDAEGRNFTYLFVEPPSGIDEYRAWVDK-MSVSKDP 59
           + G++  +EP+ P H D L  A  D   G+ +   +   P   +  RA +++ + + +  
Sbjct: 9   LKGQFATIEPLHPEHHDALIAAVSD---GKLWKLWYTAVPKP-ENMRAEIERRLHLQQQG 64

Query: 60  MM--HAIINLDSDEAVGVASFMRIDPNFGVIEVGNINFSPRLQRTRAATEAMFLMMRRAF 117
            M    I   D+    G+ ++M  D     +E+G+  ++   QRT   TE   +M+  AF
Sbjct: 65  SMLPFVIRRNDTGALCGMTTYMNADSVHRRVEIGSTWYAASAQRTGINTECKLMMLTHAF 124

Query: 118 DELGYRRYEWKCDSLNAPSRAAAARYGFTFEGVFRQAVVYKNRS-RDTAWFSIIDSEWPQ 176
           +++     E++   +N  SRAA AR G   +GV R  +   + S RDT  FSII+SEWP 
Sbjct: 125 EDMHCIAVEFRTHWMNQQSRAAIARLGAKQDGVLRNHMRMPDGSYRDTVVFSIIESEWPT 184

Query: 177 VKSAFE 182
           V+   +
Sbjct: 185 VRRHLQ 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,926
Number of extensions: 26907
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)