BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0070.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310416|ref|YP_003774508.1| MocR family transcription regul...   142   3e-35
gi|300311016|ref|YP_003775108.1| MocR family transcription regul...    68   6e-13
gi|300311139|ref|YP_003775231.1| MocR family transcription regul...    65   3e-12

>gi|300310416|ref|YP_003774508.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score =  142 bits (357), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 115/222 (51%), Gaps = 35/222 (15%)

Query: 11  FRIGVPALDLFPGDVWARLQADFWRRGTENRIGYSDPAGDPQLREMLAGYLRNSRGLVCD 70
           F  GVP +   P  +W RLQ   WRR   + + Y   AG   LRE +A YLR +R + C 
Sbjct: 156 FMPGVPDVTCVPYKIWGRLQNKHWRRSNADLLTYGPGAGYAGLREQIAEYLRVARSVNCT 215

Query: 71  PDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGYPRAASAL----------XMENPG-- 118
           P Q++IT G  Q+L +  +LL   GD+A +E+P Y    S L           ++  G  
Sbjct: 216 PSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMR 275

Query: 119 --------------------YPRA---ASARRLDLLAWAEANQSYILEDDYDGEYRYSGT 155
                               YP     + +RR  LL +A  ++ +I+EDDYD E+RY G 
Sbjct: 276 MRLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGR 335

Query: 156 PLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAPPAXARC 197
           PLA L  +D   RVL+MGTFSKI FPGLR+G++V P + AR 
Sbjct: 336 PLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARA 377


>gi|300311016|ref|YP_003775108.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 480

 Score = 67.8 bits (164), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 42/208 (20%)

Query: 20  LFPGDVWARLQADFWRRGTENRIGYSDPAGDPQL-REMLAGYLRNSRGLVCDPDQIIITA 78
           LFP    A+      R  +++ +    P G P+L R++   YL N  GL  DP++I+IT 
Sbjct: 128 LFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLEN--GLKVDPEEIVITV 185

Query: 79  GTQQALFMCAQLLLNPGDTAAMENPGYPRAASALX------------------------- 113
           G  +A+ +C Q +  PGDT A+E P +     A+                          
Sbjct: 186 GATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALEER 245

Query: 114 --------------MENPGYPRAASARRLDLLAWAEANQSYILEDDYDGEYRYSGTPLAL 159
                          +NP   +   + +  L+  AE +Q  ++E+    E  Y     + 
Sbjct: 246 MKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNAHPSS 305

Query: 160 LASLDRSGRVLHMGTFSKIAFPGLRLGY 187
           L + DR G VLH  +FSK      R+G+
Sbjct: 306 LKNYDRDGLVLHCSSFSKSLTSAYRIGW 333


>gi|300311139|ref|YP_003775231.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 38/175 (21%)

Query: 53  LREMLAGYLRNSRGLVCDPDQIIITAGTQQALFMCAQLLLNPGDTAAMENPGYPRAASAL 112
           LRE +A  L ++ G     +Q+++ +G+QQ L +  ++L++ G    +E P Y  A  A 
Sbjct: 82  LREWIAASL-STNGAQISAEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAF 140

Query: 113 XM------------------------------------ENPGYPRAASARRLDLLAWAEA 136
            +                                    +NP      + RR  L+     
Sbjct: 141 ALYGAKFESVPSDEFGLQPETIEAIAGGARMLYSLPNFQNPTGRTLPTERRFKLVETCAR 200

Query: 137 NQSYILEDDYDGEYRYSGTPLALLASLDRSGRVLHMGTFSKIAFPGLRLGYIVAP 191
               ++EDD  G   Y   PL  + S++ SG V++MG+FSK+  PG+RLGY+VAP
Sbjct: 201 LGLPLIEDDPYGALSYQNAPLPKMLSMNPSG-VIYMGSFSKVLTPGIRLGYVVAP 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 714,797
Number of extensions: 28582
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 4
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)