BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0065.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase [H...   270   4e-74
gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspiril...    79   2e-16

>gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  270 bits (690), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 135/148 (91%)

Query: 1   MTVLMTPDMANFSGNVHGGTILKFLDQVAYACASRYAGQYVVTLSVDQVMFRQPIHVGEL 60
           MTVLMTPDMANF+GNVHGGTILK LDQVAYAC SRYAGQYVVTLSVDQVMFRQPIHVGEL
Sbjct: 10  MTVLMTPDMANFAGNVHGGTILKLLDQVAYACGSRYAGQYVVTLSVDQVMFRQPIHVGEL 69

Query: 61  VSFLASVNHTGTSSMEVGIKVVAENIRTQEVRHVNSCFFTMVAVDGERKPVAVPSLRPFT 120
           V+FLASVNHTG SSME+GIKVVAENIRTQE RHVNSCFFTMVAVD +RKP+ VP LRPF+
Sbjct: 70  VTFLASVNHTGKSSMEIGIKVVAENIRTQETRHVNSCFFTMVAVDDQRKPIPVPPLRPFS 129

Query: 121 GEEKRRFEAAKLRKKLRAELSHRFDEAK 148
            EEKRRFEAA +RK LR EL+ R+DE K
Sbjct: 130 QEEKRRFEAAVIRKSLRQELARRYDEVK 157


>gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 144

 Score = 78.6 bits (192), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 1   MTVLMTPDMANFSGNVHGGTILKFLDQVAYACASRYAGQYVVTLSVDQVMFRQPIHVGEL 60
           + V+  P  AN  G+V GG I+  +D      A+R A   V T++V+  +F+ P+ VG+L
Sbjct: 16  LRVMPMPSDANVYGDVFGGWIMAQVDIAGSLPATRRANGRVATIAVNSFLFKNPVFVGDL 75

Query: 61  VSFLASVNHTGTSSMEVGIKVVAENIRTQ-EVRHVNSCFFTMVAVDGERKPVAVPSLRP 118
           +SF A +   G +S+ V ++V AE  R Q E+  V     T VA D  RKP  +P L P
Sbjct: 76  LSFYADIVKVGNTSITVNVEVYAERNRLQTEIVKVTEATLTYVATDENRKPRPLPPLDP 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 418,774
Number of extensions: 14656
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)