BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0064.p (111 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311988|ref|YP_003776080.1| D-3-phosphoglycerate dehydrogen... 144 2e-36 gi|300313156|ref|YP_003777248.1| D-2-hydroxyacid dehydrogenase [... 101 2e-23 gi|300310960|ref|YP_003775052.1| dehydrogenase oxidoreductase [H... 75 9e-16 gi|300309865|ref|YP_003773957.1| D-isomer specific 2-hydroxyacid... 64 2e-12 gi|300313735|ref|YP_003777827.1| D-3-phosphoglycerate dehydrogen... 62 1e-11 >gi|300311988|ref|YP_003776080.1| D-3-phosphoglycerate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 310 Score = 144 bits (363), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 69/100 (69%), Positives = 78/100 (78%) Query: 10 GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69 G RHL+ AR L+ LGP+G+LVNI RGS+VDT AL AAL G L GAGLDVYE EPQPP Sbjct: 204 GAQTRHLINARVLEELGPQGYLVNIGRGSIVDTDALGAALSSGRLAGAGLDVYEGEPQPP 263 Query: 70 RELLEFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAA 109 L+ NVVLTPH+AGWSPEAI AS+T+FLRN E HFAA Sbjct: 264 AALIALPNVVLTPHIAGWSPEAIRASVTQFLRNCEEHFAA 303 >gi|300313156|ref|YP_003777248.1| D-2-hydroxyacid dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 316 Score = 101 bits (251), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/98 (55%), Positives = 63/98 (64%) Query: 14 RHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPPRELL 73 R LV A L+ALGPKGFL+N++RGSVVD AAL AAL G + GAGLDV+ EP P EL Sbjct: 212 RALVNAEVLEALGPKGFLINVARGSVVDEAALIAALKTGVIAGAGLDVFADEPNVPAELA 271 Query: 74 EFKNVVLTPHMAGWSPEAITASITKFLRNAEAHFAAVG 111 NVVLTPHMA + TA N +AHF+ G Sbjct: 272 ALDNVVLTPHMASGTLVTRTAMADLAFNNLQAHFSGAG 309 >gi|300310960|ref|YP_003775052.1| dehydrogenase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 326 Score = 75.5 bits (184), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 49/79 (62%) Query: 10 GRPXRHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPP 69 + H + A EL + P L NI+RG +VD AAL AAL +G + AG+DV+E+EP Sbjct: 213 SKDTHHTIAAAELALMKPTATLTNIARGGIVDDAALIAALREGRIAAAGVDVFENEPAFK 272 Query: 70 RELLEFKNVVLTPHMAGWS 88 E L+ NVVLTPH+A S Sbjct: 273 PEFLDLSNVVLTPHIASAS 291 >gi|300309865|ref|YP_003773957.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 64.3 bits (155), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 47/79 (59%) Query: 16 LVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEPQPPRELLEF 75 ++ A L ALG +G L+NI+RG +V L AL +G + GAGLDV+ EP P LL+ Sbjct: 246 IINAAVLDALGREGILINIARGKLVVEEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQM 305 Query: 76 KNVVLTPHMAGWSPEAITA 94 VVL H A + E+ TA Sbjct: 306 DQVVLQAHRASATVESRTA 324 >gi|300313735|ref|YP_003777827.1| D-3-phosphoglycerate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 308 Score = 62.0 bits (149), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 14 RHLVGARELQALGPKGFLVNISRGSVVDTAALAAALGKGELGGAGLDVYESEP-QPPREL 72 +H++ A+ L + LVN +RG ++D AL AAL G+L AGLD +E EP P L Sbjct: 212 KHMINAQSLARMKDGAILVNTARGGLIDEQALIAALDSGKLRAAGLDSFEKEPFTAPHPL 271 Query: 73 LEFKNVVLTPHMAGWSPEAITA 94 N VL+PH+ G + +A A Sbjct: 272 QRVGNAVLSPHIGGVTSDAYIA 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 306,098 Number of extensions: 8696 Number of successful extensions: 57 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 8 Length of query: 111 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 38 Effective length of database: 1,274,215 Effective search space: 48420170 Effective search space used: 48420170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)