BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0056.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...   105   3e-24
gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...    69   3e-13

>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  105 bits (263), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 76/126 (60%)

Query: 9   INGKQHNVDLPEDTPILWTLRDQLGMTGTKFGCGMALCGACTVHLDGEPIRSCITPISAA 68
           +NG   ++D+  D P+L  LR+ L + G KFGCG+  CGACTV +DG   RSC+ P++  
Sbjct: 11  VNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIPLAGV 70

Query: 69  VGKKITTIEAIAEDKIGKSVQEAWMALGVPQCGYCQAGQIMSATALLRATPNPSDKDIDD 128
             + +TT++ + +D     VQ+A++     QCGYC  G IM+  ALL  +P PS+ +I  
Sbjct: 71  AARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSEDEIRH 130

Query: 129 AMSGNI 134
            +  N+
Sbjct: 131 ELDFNL 136


>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 7   LTINGKQHNV--DLPEDTPILWTLRDQLGMTGTKFGCGMALCGACTV---HLDGE----- 56
               G+ H+V    P  T +L  LR+ L  TGTK GC    CGACTV    L GE     
Sbjct: 10  FYFRGQTHSVAGHSPTRT-VLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLALK 68

Query: 57  PIRSCITPISAAVGKKITTIEAIAE-DKIGKSVQEAWMALGVPQCGYCQAGQIMSATAL- 114
            + +CI  +    G+ + T+E + + D     VQ+A +     QCG+C  G +MS   L 
Sbjct: 69  TVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWGLY 128

Query: 115 LRATPN---PSDKDIDDAMSGNI 134
           LR   +   PS ++IDDA+SGN+
Sbjct: 129 LRHEQDGVTPSKREIDDALSGNL 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,929
Number of extensions: 34604
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)