BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0054.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310664|ref|YP_003774756.1| xanthine/CO dehydrogenase matur...   273   1e-74

>gi|300310664|ref|YP_003774756.1| xanthine/CO dehydrogenase
           maturation protein [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  273 bits (699), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/272 (53%), Positives = 181/272 (66%), Gaps = 2/272 (0%)

Query: 1   MESIDFDVLNTALAWHEQGHRVLLGTVTHTWGSAPRPVGSMMAIRGDGHVRGSVSGGCVE 60
           M+SID DVL  +  W E G  VLL TV  TWGSAPRPVG+M+A+R DG + GSVSGGC+E
Sbjct: 1   MDSIDLDVLKRSQQWLEAGRGVLLATVVRTWGSAPRPVGAMLALRDDGALVGSVSGGCIE 60

Query: 61  DDLIRRIQGGELERTLPFALTYGLTADEAHRFGLPCGGTLEIMMEPVSAQSRITELLAAV 120
           DDLI  +Q   +    P  L YG+ AD+AHRFGLPCGGTLE++ EP+SAQSRI ELL+ +
Sbjct: 61  DDLIASVQRDGIVPQRPGRLVYGVDADQAHRFGLPCGGTLELVTEPLSAQSRIGELLSML 120

Query: 121 RQGLRVTRTLDLDTGAATLATDSEARQTVVQDRKLIAPYGPRYRLVIIGAAQMSRYVAQF 180
            +G  V R L L +G   L +        V    L+  +GPRYRL++IGA ++SR +   
Sbjct: 121 AEGRLVHRRLCLRSGEVRLESAPAGSSLQVDAHALVTVHGPRYRLLVIGAGELSRILCAM 180

Query: 181 ALALDYQVIVCDPREEYLHEWDIPGVELSGEMPDDLLLRLQLDANSAVVTLTHDPKLDDM 240
           ALALD+QV VCDPR EYL +WD+ GVEL   MPDD +  +Q DA SAV+ LTHDPKLDD+
Sbjct: 181 ALALDFQVTVCDPRSEYLDQWDLAGVELVRSMPDDTVDAMQPDACSAVLALTHDPKLDDL 240

Query: 241 ALIEAXHDPKLDDMALISTRRAHAPVRRYRCR 272
           AL++A   P     AL S    HA  RR R R
Sbjct: 241 ALMQALKTPAFYVGALGSRANNHA--RRERLR 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,169,344
Number of extensions: 50346
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)