BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0051.p (944 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 179 1e-45 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 177 5e-45 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 159 1e-39 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 125 2e-29 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 118 2e-27 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 233/465 (50%), Gaps = 36/465 (7%) Query: 335 LAGQVGMAIQNARSVEAEKQRADLLAEL-------DQAKTTFFSNVSHEFRTPLTLMLGP 387 L G +G + R V ++ A L L ++AK+ F + VSHE RTP+ +LG Sbjct: 310 LVGLIGGFVLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILG- 368 Query: 388 LDDMIADKEHGLPPVQQERAQMLRRNALRLQRLVNALLDFSRTQAGRTQASYVQIDLAAF 447 L +++ E GL Q++ A + L R++N +LDFS+ ++G+ V Sbjct: 369 LSELLM--ESGLSSKQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRL 426 Query: 448 TADLASTFRSTIEGAGLTFEV--DCPPLAEETYV--DPSMWEKIVLNLLSNAFKFTFAGK 503 +L+ +R +++ + F++ DCP E V DP+ ++++ NLLSNA KFT AG Sbjct: 427 VQELSDLYRPSLQRKDVQFDLHLDCP---ENLSVVGDPARLKQVLGNLLSNAIKFTQAGH 483 Query: 504 ISVRLRGHGDH-------IRLTVSDTGVGIASDQLPLVFKRFHRIEGSQSRTHEGSGIGL 556 + + + D + ++DTG+GI+ + L +F+ F + + S SR G+G+GL Sbjct: 484 VQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGL 543 Query: 557 ALVRDLVTLLGGTIGVDSDLELGSSFTLTIPSGRAHLPSERVVESLGPVNSSLSPLGDAY 616 A+ ++LV L+GGTI S + F+ I A P+ E + + A Sbjct: 544 AISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTPAP---EPVSEAAAPAPATALAT 600 Query: 617 AAEADRWSGARNGNTAEPEDAATAERNRANQV-----LSASARILVADDNADMREYLSNL 671 A A + G P++A N L A ARIL+A+D R+ L L Sbjct: 601 TAPALPPAAEAPGTLMPPDNAPQPPSNVDASATVLPSLLAGARILMAEDTEINRQLLRIL 660 Query: 672 L-QSHWRVEAVGNGVEALESVRANPPDLILSDVMMPQLDGFGLLAALRSNDASKDI---P 727 L + ++ V NG++A+E++R DL+L D MMP +DG+ A +R+++A++ + P Sbjct: 661 LARKGCILQEVENGLQAVEAIRTGHYDLVLMDCMMPIMDGYQATAEIRAHEAARGLPRTP 720 Query: 728 FFLLSARSGEEARLEGLAAGADDYLVKPFSSRELIARIESMLLRS 772 L+A + E R L AG DDYL KPF+ L+ +E L +S Sbjct: 721 IIALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMQTVEKWLQKS 765 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 133/430 (30%), Positives = 207/430 (48%), Gaps = 47/430 (10%) Query: 343 IQNARSVEAEKQRADLLAE-LDQAKTTFFSNVSHEFRTPLTLMLGPLDDMIADKEHGLPP 401 I+ + +AE QRA AE + AK+ F + +SHE RTPL +LG + D +PP Sbjct: 664 IEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDAT--IPP 721 Query: 402 VQQERAQMLRRNALRLQRLVNALLDFSRTQAGRTQASYVQIDLAAFTADLASTFRSTIEG 461 +++ ++RR+ L L++ LLD ++ +AG+ + + ++ L AF + F E Sbjct: 722 ARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQ 781 Query: 462 AGLTFEVD-CPPLAEETYVDPSMWEKIVLNLLSNAFKFTFAGKISVRLRGHGDHIRLTVS 520 GL F D L + + D +I++NLL NA KFT G +++RLR + V Sbjct: 782 KGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIAYFDVI 841 Query: 521 DTGVGIASDQLPLVFKRFHRIEGSQSRTHEGSGIGLALVRDLVTLLGGTIGVDSDLELGS 580 DTG+GIA D +F F R + R G+G+GLA+ R LV ++GG + V S + GS Sbjct: 842 DTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGS 901 Query: 581 SFTLTIPSGRAHLPSERVVESLGPVNSSLSPLGDAYAAEADRWSGARNGNTAEPEDAATA 640 SF L I H+P R+ D+ SG A P Sbjct: 902 SFHLKIYLPEVHVPRPRI-------------------KLEDQMSG-----YAGP------ 931 Query: 641 ERNRANQVLSASARILVADDNADMREYLSNLLQS-HWRVEAVGNGVEALESVRANPPDLI 699 S ILV DD A R L ++L + V +G+ +E++ PDL+ Sbjct: 932 -----------SRHILVVDDQASQRRLLKDMLMPLGFTVSEADSGLACMETLGHALPDLV 980 Query: 700 LSDVMMPQLDGFGLLAALRSNDASKDIPFFLLSARSGEEARLEGLAAGADDYLVKPFSSR 759 L D+ MPQ+DG+ + A+R+ ++ +P L+SA + E +D++VKP S Sbjct: 981 LLDIAMPQMDGWSVARAIRARGLAQ-LPILLVSANAFENLHERNEPPLVNDFVVKPVSYH 1039 Query: 760 ELIARIESML 769 EL+ +I L Sbjct: 1040 ELLGKIRQHL 1049 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/430 (32%), Positives = 208/430 (48%), Gaps = 27/430 (6%) Query: 354 QRADLLAELDQAKTTFFSNVSHEFRTPL--TLMLGPLDDMIADKEHGLPPVQQER-AQML 410 ++A L +Q K+ F +N+SHE RTPL TL+L L +AD + G +Q R AQ + Sbjct: 463 EKATELERANQYKSEFLANMSHELRTPLNSTLILAKL---LADNKQGNLSDEQVRFAQTI 519 Query: 411 RRNALRLQRLVNALLDFSRTQAGRTQASYVQIDLAAFTADLASTFRSTIEGAGLTFEVDC 470 L L+N +LD S+ +AG+ L +L+++F T + GL F+V+ Sbjct: 520 SSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEV 579 Query: 471 PP-LAEETYVDPSMWEKIVLNLLSNAFKFTFAGKISVRLR-GHGDHIRLTVSDTGVGIAS 528 P + + D +I+ NLLSNA KFT G++S+R+ G I V DTG+GI Sbjct: 580 EPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDAGGRIAFAVRDTGIGIGE 639 Query: 529 DQLPLVFKRFHRIEGSQSRTHEGSGIGLALVRDLVTLLGGTIGVDSDLELGSSFTLTIP- 587 DQ +F+ F + +GS R + G+G+GL++ RDL LLGG I V S L GS FTL++P Sbjct: 640 DQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPP 699 Query: 588 -SGRAHLPSERVVESLGPVNSSLSPLGDAYAAEADRWSGARNGNTAEP----EDAATAER 642 S E ++ S L A+ A A R A P E + +R Sbjct: 700 LYSSEQAVSNTAPEPTPAAAAAASTLQAAHVATAPDVRINRTPAAAAPQRLQEISIDDDR 759 Query: 643 NRANQVLSASARILVADDNADMREYLSNLLQSHW----RVEAVGNGVEALESVRANPPDL 698 +R + ++S ILV +D+A L +L + + GV A E R P Sbjct: 760 DR---IETSSRLILVIEDDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYR---PSA 813 Query: 699 ILSDVMMPQLDGFGLLAALRSNDASKDIPFFLLSARSGEEARLEGLAAGADDYLVKPFSS 758 IL D+ +P G G+L ++ N ++ IP ++S E + GA Y +KP Sbjct: 814 ILMDMNLPDFSGLGVLDQIKRNPKTRHIPVHVVSVADYSH---EAMERGAIGYALKPVQR 870 Query: 759 RELIARIESM 768 ELI I + Sbjct: 871 EELIGAIRKL 880 Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 7/119 (5%) Query: 654 RILVADDNADMREYLSNLLQSH-WRVEAVGNGVEALESVRAN------PPDLILSDVMMP 706 RILV +D+ LS++L+ +VE NG EAL++++ + P DL+L D+MMP Sbjct: 1036 RILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMDIMMP 1095 Query: 707 QLDGFGLLAALRSNDASKDIPFFLLSARSGEEARLEGLAAGADDYLVKPFSSRELIARI 765 ++DG + +R K +P L+A++ ++ + + LAAGA+DY+ KP +L++ + Sbjct: 1096 EMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 125/413 (30%), Positives = 196/413 (47%), Gaps = 31/413 (7%) Query: 361 ELDQAKTTFFSNVSHEFRTPLTLMLGPLDDMIADKEHGLP-PVQQERAQMLRRNALRLQR 419 + + AK+ F ++VSHE RTP+ +LG MI + P P QQ+ +A L Sbjct: 892 QANSAKSLFLASVSHEIRTPMNGVLG----MIQLLQRTQPLPAQQDYLDKAEISAKSLLN 947 Query: 420 LVNALLDFSRTQAGRTQASYVQIDLAAFTADLASTFRSTIEGAGLTFEVDC-PPLAEETY 478 L+N LLDFS+ A + Q +L F +LA+ + AG++ + P L Sbjct: 948 LLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLV 1007 Query: 479 VDPSMWEKIVLNLLSNAFKFTFAGKISVR------LRGHGDHIRLTVSDTGVGIASDQLP 532 D +++++NL NA KFT G I V L G +R+ VSDTG+GIA+D+L Sbjct: 1008 GDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAADRLD 1067 Query: 533 LVFKRFHRIEGSQSRTHEGSGIGLALVRDLVTLLGGTIGVDSDLELGSSFTLTIPSGRAH 592 +F F + E S +R + G+G+GLA+ + LV L+GG + V S+ GS F + + Sbjct: 1068 DIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDL---QLA 1124 Query: 593 LPSERVVESLGPVNSSLSPLGDAYAAEADRWSGARNGNTAEPEDAATAERNRANQVLSAS 652 + + V LGP + + A A +G+R PE A +A + Q Sbjct: 1125 VDDDSV---LGPAAADDAARPQPLQA-ASHTAGSR-----APETARSAPDAQCLQ----G 1171 Query: 653 ARILVADDNADMREYLSNLLQ-SHWRVEAVGNGVE--ALESVRANPPDLILSDVMMPQLD 709 +IL+ +DN R+ S LL S +V +G A+ A DL+L D+ MP +D Sbjct: 1172 VQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLVLMDLQMPGMD 1231 Query: 710 GFGLLAALRSNDASKDIPFFLLSARSGEEARLEGLAAGADDYLVKPFSSRELI 762 G +R + +P ++A + E + + AG ++ KP LI Sbjct: 1232 GIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIATLI 1284 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 134/255 (52%), Gaps = 17/255 (6%) Query: 344 QNARSVEAEKQRADLLAELDQAKTTFFSNVSHEFRTPLTLMLGPLDDMIADKEHGLPPVQ 403 +NAR+ E Q + + F S +SHE RTP+ +LG + + + L Q Sbjct: 65 ENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTR---LDTQQ 121 Query: 404 QERAQMLRRNALRLQRLVNALLDFSRTQAGRTQASYVQIDLAAFTADLAS--TFRSTIEG 461 E A+ + +A L +VN +LDFS+ G+ + V+ DLA A +F++ + Sbjct: 122 AEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKR 181 Query: 462 AGLTFEVDC--PPLAEETYVDPSMWEKIVLNLLSNAFKFTFAGKISVR---LRGHGDH-- 514 L +D PP DP +I+LNLL NA KFT AG++ +R L+ DH Sbjct: 182 VRLLAHLDSRLPP---RLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHCR 238 Query: 515 IRLTVSDTGVGIASDQLPLVFKRFHRIEGSQSRTHEGSGIGLALVRDLVTLLGGTIGVDS 574 +R V D+G+G+ D L +F F + + S +R + G+G+GL++ + LV L+GG+IGV+S Sbjct: 239 VRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVES 298 Query: 575 DLELGSS--FTLTIP 587 L GS F L IP Sbjct: 299 ALGTGSCFWFELGIP 313 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,784,095 Number of extensions: 118368 Number of successful extensions: 676 Number of sequences better than 1.0e-08: 79 Number of HSP's gapped: 607 Number of HSP's successfully gapped: 82 Length of query: 944 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 850 Effective length of database: 1,174,780 Effective search space: 998563000 Effective search space used: 998563000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)