BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0049.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312489|ref|YP_003776581.1| prolyl iminopeptidase [Herbaspi...   542   e-155
gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamil...    57   3e-09

>gi|300312489|ref|YP_003776581.1| prolyl iminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  542 bits (1396), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 289/313 (92%)

Query: 9   LRTLYPPIAPYESGMLDVGDGHSVYWETCGNPKGKPVVFLHGGPGGGCGPSHRQLFNPEK 68
           LRT YPPI PY+ G+LDVGDGH VYWE CGNPKGKPVVFLHGGPGGGCGPSHR+LFNPEK
Sbjct: 13  LRTFYPPIEPYDHGLLDVGDGHRVYWEVCGNPKGKPVVFLHGGPGGGCGPSHRRLFNPEK 72

Query: 69  YRIVLFDQRGCGRSQPHANLDANTTWDLVADIERLRVLLGVDKWQVFGGSWGSTLALAYA 128
           YRIVLFDQRGCGRSQPHANL+ANTTWDLVADIERLR +LG+++WQVFGGSWGSTLALAYA
Sbjct: 73  YRIVLFDQRGCGRSQPHANLEANTTWDLVADIERLREMLGIERWQVFGGSWGSTLALAYA 132

Query: 129 ETHPERVTELVLRGIFLLRQSELDWYYQEGASWLAPDRWDEFLAPIPEAERGDLMSAYRK 188
           +THP+RVTEL+LRGIFLLRQ+ELDWYYQEGASW+APDRWDEFLAPIP AERG+L+ AYR+
Sbjct: 133 QTHPQRVTELILRGIFLLRQAELDWYYQEGASWMAPDRWDEFLAPIPVAERGNLVHAYRQ 192

Query: 189 RLVGDDEAAKLEAARTWSRWEASTVTLVPDEGMIAGFSDAHFALAFARIENHYFVHHGFM 248
           RL GDDE AKL+AAR WSRWEAST+TLV DE +I  F+DA FALAFARIENHYF H GFM
Sbjct: 193 RLTGDDETAKLQAARAWSRWEASTITLVADERLIDSFNDAQFALAFARIENHYFFHKGFM 252

Query: 249 EEGQLLANAGRLKGIPGVIVQGRYDIVTPAKSAWDLHKAWPDSTLHLVGSAGHAYNEPGI 308
           EEGQLLANA RL+GIPGVIVQGRYD+ TPAKSAWDLH+AWP S LHL+ SAGHAYNEPGI
Sbjct: 253 EEGQLLANAARLEGIPGVIVQGRYDLATPAKSAWDLHQAWPGSQLHLIDSAGHAYNEPGI 312

Query: 309 LDQLIRATDGFAD 321
           LDQLIRATD FAD
Sbjct: 313 LDQLIRATDHFAD 325


>gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 38  GNPKGKPVVFLHG--GPGGGCGPSHRQLFNPEKYRIVLFDQRGCGRSQPHANLDANTTWD 95
           G+P+G P++ LHG  G G   G   ++L  P  YR +  DQRG G+S   A   AN   D
Sbjct: 21  GDPQGFPLLLLHGIRGYGETFGDLAQRL--PPGYRCIALDQRGRGQSDWDAG--ANYYTD 76

Query: 96  -LVADIERLRVLLGVDKWQVFGGSWGSTLALAYAETHPERVTELVL 140
             VAD+E L   L + ++ + G S G   A+ YA  HP +V  L++
Sbjct: 77  AYVADVEALVARLNLRQFDLLGHSMGGINAIVYAARHPAKVRRLII 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,236
Number of extensions: 49144
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)