BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0048.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease prot...   195   2e-51

>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease
           proteolytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  195 bits (496), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 101/117 (86%)

Query: 3   AFSPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESE 62
           A   + L +VP V+EQSGR ERAYDIYSRLL+ERIIFLVGPV D  ANLIVAQLLFLESE
Sbjct: 9   ALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESE 68

Query: 63  DPDKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           +PDKDISLYINSPGG V AG+AI+DTMQFI+PQVSTLCTG AASMGA LLAAG K +
Sbjct: 69  NPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 570,124
Number of extensions: 19915
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)