BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0046.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase...   156   1e-39

>gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase I
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  156 bits (394), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 6/182 (3%)

Query: 22  CAW-HAAMP---EYHGSEWGRPVADDVRLFEKICLEGFQSGLAWITILRKRENFRAAFDG 77
           C W + A P   +YH  EWG P  D+ RLFE + LEG Q+GL+W T+L KRE++RAAFDG
Sbjct: 8   CGWVNLANPRYIDYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRESYRAAFDG 67

Query: 78  FDFHRVARYTEPDIGRLLGDAGIIRNRAKIVSAINNARRAIELVEEAGSLAAWFWQFEPA 137
           +D  ++ARY E  + +LL D GI+RNR K+ + I NAR  ++L EE G L A+ W     
Sbjct: 68  WDAEKIARYDERKVAQLLADPGIVRNRLKVAATIGNARAYLKLREEIGGLDAYLWAHVDG 127

Query: 138 AKDRPKVLTLDYWQANPTSEASVALSKALKKRGWTFVGPTTIYAFMQAMGLVNDHLTGCA 197
                +  +L   +    +  S A+SK L +RG+ FVG T IYA++Q +G++NDH+  C 
Sbjct: 128 QAIVNRWASLA--ECPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDHVQDCH 185

Query: 198 CR 199
           C 
Sbjct: 186 CH 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 701,414
Number of extensions: 28147
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)