BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0045.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semial...   163   7e-42
gi|300310458|ref|YP_003774550.1| NADP-dependent succinate-semial...   109   9e-26
gi|300314042|ref|YP_003778134.1| signal transduction protein con...    82   3e-17
gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei...    75   3e-15
gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies...    70   1e-13

>gi|300310410|ref|YP_003774502.1| NADP-dependent
           succinate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 484

 Score =  163 bits (412), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 74/80 (92%), Positives = 79/80 (98%)

Query: 87  ISXANDTEFGLASYFYSRDIGRIWRVAEGLESGIVGINTGLISNEVAPFGGVKQSGMGRE 146
           ++ ANDTEFGLASYFYSRDIGRIWRVAEGLESG+VGINTGLISNEVAPFGGVKQSG+GRE
Sbjct: 405 LALANDTEFGLASYFYSRDIGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGRE 464

Query: 147 GSHYGIDDYLVIKYLCMGGI 166
           GSHYGIDDYLV+KYLCMGGI
Sbjct: 465 GSHYGIDDYLVVKYLCMGGI 484


>gi|300310458|ref|YP_003774550.1| NADP-dependent
           succinate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 493

 Score =  109 bits (273), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 61/78 (78%)

Query: 87  ISXANDTEFGLASYFYSRDIGRIWRVAEGLESGIVGINTGLISNEVAPFGGVKQSGMGRE 146
           I+ AN T FGLA+YFYS D+ RI RV + LESGIVG+N G ++ E APFGGVK+SG GRE
Sbjct: 414 IAAANATPFGLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGRE 473

Query: 147 GSHYGIDDYLVIKYLCMG 164
           GS +G+DDYL  KY+C G
Sbjct: 474 GSVHGLDDYLHTKYVCQG 491


>gi|300314042|ref|YP_003778134.1| signal transduction protein
           containing a membrane domain, an EAL and a GGDEF
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 948

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 54/80 (67%)

Query: 2   GVHGLTMAVNLSAKQFAQKNLAAMVRRALDDSGFSSHCLELELTESASMESPEKSIEVMK 61
           G   ++++VNLS  QF QK+L + +   L+D+G     LELELTES  M   E +I ++ 
Sbjct: 776 GYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILA 835

Query: 62  LLKAMGVRLSIDDFGTGYSS 81
            LK +GVRLSIDDFGTGYSS
Sbjct: 836 GLKKLGVRLSIDDFGTGYSS 855


>gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 695

 Score = 75.1 bits (183), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query: 1   MGVHGLTMAVNLSAKQFAQKNLAAMVRRALDDSGFSSHCLELELTESASMESPEKSIEVM 60
           +G    TM+VNLSA QFA  +L  +VR  L+       CL LE+TES +M   E S++ +
Sbjct: 521 LGYVDWTMSVNLSALQFADPHLLEVVRTTLERHQLPPPCLTLEVTESTAMHDTEASLQTL 580

Query: 61  KLLKAMGVRLSIDDFGTGYSS 81
           + +  +GV +SIDDFGTGYSS
Sbjct: 581 RQIADLGVEISIDDFGTGYSS 601


>gi|300312904|ref|YP_003776996.1| diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score = 69.7 bits (169), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 2   GVHGLTMAVNLSAKQFAQKNLAAMVRRALDDSGFSSHCLELELTESASMESPEKSIEVMK 61
           G+  + +AVNLS +Q  Q +L   V   L  SG ++  LELE+TE+  M+  EKS+  + 
Sbjct: 524 GLPPIPVAVNLSPRQLNQ-SLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLH 582

Query: 62  LLKAMGVRLSIDDFGTGYSS 81
            LK +G+++S+DDFGTGYSS
Sbjct: 583 ALKRLGLQISVDDFGTGYSS 602


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 502,683
Number of extensions: 20010
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 21
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 21
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)