BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0044.p
         (80 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semial...    89   9e-20
gi|300310458|ref|YP_003774550.1| NADP-dependent succinate-semial...    62   1e-11
gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrog...    55   8e-10

>gi|300310410|ref|YP_003774502.1| NADP-dependent
           succinate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 484

 Score = 88.6 bits (218), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%)

Query: 1   VQDGVYDKFADKLVAAVAQLKVGNGVDSGVTQGPLIDEKAVQKVEQHVADAQAKGGRV 58
           VQDGVYD FA KLV AV + KVG G + GVTQGPLI+E+AVQKVEQHVADA AKG RV
Sbjct: 298 VQDGVYDAFAAKLVEAVKKFKVGQGTEEGVTQGPLINEQAVQKVEQHVADAVAKGARV 355


>gi|300310458|ref|YP_003774550.1| NADP-dependent
           succinate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 493

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 1   VQDGVYDKFADKLVAAVAQLKVGNGVDSGVTQGPLIDEKAVQKVEQHVADAQAKGGRV 58
           VQ+ VYD F DKL A VA LKVG   D     GP+I+ +A+ K++QHV DA A+G RV
Sbjct: 303 VQEKVYDAFVDKLGARVAALKVGPATDPASQIGPMINARAIAKIDQHVRDAIARGARV 360


>gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score = 55.5 bits (132), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 41/60 (68%)

Query: 1   VQDGVYDKFADKLVAAVAQLKVGNGVDSGVTQGPLIDEKAVQKVEQHVADAQAKGGRVDS 60
           VQ GV++ F DK V    QLKVGNG+++G+T GP+ +++ +  +E  + DA ++G ++ +
Sbjct: 291 VQKGVFNAFVDKFVTYAEQLKVGNGLEAGITMGPVANKRRIPALEALIDDAVSQGAQLRT 350


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 255,840
Number of extensions: 8812
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 80
Length of database: 1,619,870
Length adjustment: 51
Effective length of query: 29
Effective length of database: 1,378,385
Effective search space: 39973165
Effective search space used: 39973165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)