BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0043.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio...    90   2e-19
gi|300311453|ref|YP_003775545.1| signal transduction containing ...    64   1e-11
gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [...    64   2e-11

>gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 88/169 (52%)

Query: 8   DVELSRYELTRAGIACDVQQVDTEDAFVDALSRYRPDIVLGDFSLPNFDGMSALQIVQQI 67
           D  L   EL R G     ++VD E A + AL     DIV+ D+S+P F G+ AL++V+  
Sbjct: 4   DAFLMVRELKRGGFEPAWERVDDEQALLAALQAQPWDIVISDYSMPMFSGVEALKLVKAH 63

Query: 68  TPDTPFLFVSGTMGEERAIKALKQGAYDYVLKSNLARLPSAVERALQEAHQNQIRNKMEQ 127
              TPF+ VSG +GE+ A++ +K GA DY LKS + RLP AV+R L++A   + +    Q
Sbjct: 64  NDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLKSAIGRLPHAVDRELRDAQARRKQRASAQ 123

Query: 128 ALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQG 176
           AL+  +   +A  +       + D + R    N A     G T   + G
Sbjct: 124 ALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPGDMDG 172


>gi|300311453|ref|YP_003775545.1| signal transduction containing
           PAS/GGDEF/EAL domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 683

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 18/182 (9%)

Query: 119 NQIRNKMEQALQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQGKH 178
           +QI  K+EQ  Q    +L+ + ++     + +D  G I  +N+ AE+  GY+  +  G++
Sbjct: 115 DQIEAKLEQQAQ----ILNQMHESV----ITMDPAGFITSWNRGAEQLFGYSAMEAIGRN 166

Query: 179 FWDVFFPAEELEPVRNHFLNWHAQTQPLQYQSRWLTASGERREILWLT---TFLQEDHGS 235
              ++   +E + + + FL    +    + + R    SGE   + W +   + +++ +G 
Sbjct: 167 VLFLYENEDEEDSLHDLFLEHGGR----EMEVRRRKKSGE---VFWASLSLSVMRDQNGH 219

Query: 236 ALNYICSGIDITQWRQAEDRVHRLSNYDVLTGLPNRNLLRDRLEQGITRVERERRPGLLA 295
            +  I    DIT+ + AE  +H L+ YD LTGLPNR LL   ++Q +     E   G + 
Sbjct: 220 PIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALEEARHENLHGCVM 279

Query: 296 VI 297
            I
Sbjct: 280 FI 281


>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 22/179 (12%)

Query: 129 LQAERNLLSAIFDTTGALGLMLDKEGRIVRFNQAAERTTGYTLSQVQGKH----FWDVFF 184
           ++AE  + +  FD+   + L+ D   +I+R N+A    TGY+  ++ GKH      D   
Sbjct: 470 IEAELRISAVAFDSREGM-LITDANSKILRVNKAFTEITGYSAEEIVGKHPNLLRSDRHG 528

Query: 185 PA--EELEPVRNHFLNWHAQT----QPLQYQSRWLTASGERREILWLTTFLQEDHGSALN 238
           PA  +E+      F  W  +     +  +    WLT S  + +   +T ++   H     
Sbjct: 529 PAFFQEMRESIRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVSTHH----- 583

Query: 239 YICSGIDITQWRQAEDRVHRLSNYDVLTGLPNRNLLRDRLEQGITRVERERRPGLLAVI 297
                 DI+  + AE+R+  L+ +D LT LPNR LL DRL+Q I    R +    L  I
Sbjct: 584 ------DISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTCAALLFI 636


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 966,619
Number of extensions: 39099
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)