BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0042.p (428 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311887|ref|YP_003775979.1| two component sensor histidine ... 186 4e-48 gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 112 7e-26 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 76 6e-15 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 71 1e-13 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 70 3e-13 >gi|300311887|ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 633 Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 148/259 (57%), Gaps = 28/259 (10%) Query: 183 LNRALKLEILARNQLEDANQELTRQLQLNIEKLEASNKELESFSYSXA------------ 230 ++R + +I R + E+ + L L+ L + NKELESFSYS + Sbjct: 351 ISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKELESFSYSVSHDLRAPLRAISG 410 Query: 231 ---------ADQLDEEGLRKLQVIRNNIRNMGRLIDELLEFSRLSRKELNYGHLNMSAMA 281 AD +DE+G +LQVIR N+R M LI++LL+ ++ + EL +M + Sbjct: 411 YAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFSMDDLV 470 Query: 282 KACFDDAASAVTSPATLRLGDLPAAEGDIT---LIKQVWFNLLANALKFSARREQILIDV 338 + A +P L D+P EG + LI QVW NLL+NA+KFS++ EQ + V Sbjct: 471 RQVI--AGLRRENPNVL--FDVPPLEGAVANRGLITQVWENLLSNAVKFSSKSEQPAVRV 526 Query: 339 SAESVDGILTYTVRDNGAGFDMRYYNKLFGVFQRLHRASEFEGTGVGLAIVHRIVTRHGG 398 S + Y V DNG GFDMRY +KLFG FQRLHR E+ GTG+GLA+V RIV RH G Sbjct: 527 SMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHTG 586 Query: 399 RVWAEGAVGEGAAFHFTLP 417 RVWA+ GEGA+F+F+LP Sbjct: 587 RVWAQSKPGEGASFYFSLP 605 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 102/192 (53%), Gaps = 22/192 (11%) Query: 242 LQVIRNNIRNMGRLIDELLEFSRLSRKELNYGHLNM--------SAMAKACFDDAASAVT 293 L+ I+N + +ID +L SR R E L+M +AM+ + D A Sbjct: 345 LRFIQNAVTRSAGIIDSMLRLSRAGRVEYQPVMLDMNVIAQRIVAAMSGSIRDKGAVVEV 404 Query: 294 SPATLRLGDLPAAEGDITLIKQVWFNLLANALKF--SARREQILIDVSAE---SVDGILT 348 +P +LP A GD T I+QV NL+ NA+ + AR +I ID E + G T Sbjct: 405 AP------ELPPAFGDPTAIEQVLGNLVGNAVNYLDPARPGRITIDHLREEGGAATGPET 458 Query: 349 --YTVRDNGAGFDMRYYNKLFGVFQRLHRASEFEGTGVGLAIVHRIVTRHGGRVWAEGAV 406 Y VRDNG G Y +K+F FQRLH + G G+GLA+V R+V RHGGR+W E Sbjct: 459 NVYVVRDNGLGIPPAYMHKMFIAFQRLH-GNAAPGEGIGLALVKRVVERHGGRIWVESTE 517 Query: 407 GEGAAFHFTLPA 418 G+G++F+ LPA Sbjct: 518 GQGSSFYVALPA 529 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 19/193 (9%) Query: 239 LRKLQVIRNNIRNMGRLIDELLEFSRLSRKELNYGHLNMSAMAKACFDDAASAVTSPAT- 297 ++ LQVI N R +++++LL+ SR+ +L L M A + A A PA Sbjct: 86 VKGLQVIERNARLQAQMVEDLLDMSRMLAGKLR---LETRPMDLASVAEEAIAAVRPAAE 142 Query: 298 -------LRLGDLPAAEGDITLIKQVWFNLLANALKFSARREQILIDVSAESVDGILTYT 350 LG GD ++QV +NLL NA+KF+ R+ + + +S D + Sbjct: 143 ARQIELHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGR--VSLSLRQHDDTVALE 200 Query: 351 VRDNGAGFDMRYYNKLFGVFQRL-----HRASEFEGTGVGLAIVHRIVTRHGGRVWAEGA 405 V DNG G + +F F + S G G+GLAI +V HGG++ A A Sbjct: 201 VSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASA 260 Query: 406 -VGEGAAFHFTLP 417 G GAAF TLP Sbjct: 261 GPGMGAAFTVTLP 273 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 304 PAAEGDITLIKQVWFNLLANALKFSARREQILIDVSAESVDG---ILTYTVRDNGAGFDM 360 P GD I+Q+ NLL NALKF+ E +L+ V A V + + VRD+G G D Sbjct: 194 PRLVGDPGRIRQILLNLLGNALKFTHAGE-VLLRVQALQVTSDHCRVRFEVRDSGIGMDE 252 Query: 361 RYYNKLFGVFQRLHRA--SEFEGTGVGLAIVHRIVTRHGGRVWAEGAVGEGAAFHFTL-- 416 +LF F + + ++ GTG+GL+I R+V GG + E A+G G+ F F L Sbjct: 253 DTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFELGI 312 Query: 417 PAATG 421 P TG Sbjct: 313 PVTTG 317 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 84/186 (45%), Gaps = 13/186 (6%) Query: 240 RKLQVIRNNIRNMGRLIDELLEFSRL--SRKELNYGHLNMSAMAKACFDDAASAVTSPAT 297 +K+ + NN+ +M RL ++ +R + +EL L + +AKA +P Sbjct: 755 QKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRL--LAKALEGRQVDTRIAP-- 810 Query: 298 LRLGDLPAAEGDITLIKQVWFNLLANALKFSARREQILIDVSAESVDGI--LTYTVRDNG 355 +LP D L+++V NL+ NA+K+S I I E DG + V D G Sbjct: 811 ----ELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVCVMDQG 866 Query: 356 AGFDMRYYNKLFGVFQRLHRASEFEGTGVGLAIVHRIVTRHGGRVW-AEGAVGEGAAFHF 414 GF F F R S G G+GLAI I+ H GR+W A G+GA F Sbjct: 867 RGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCF 926 Query: 415 TLPAAT 420 TLP T Sbjct: 927 TLPVET 932 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,220,802 Number of extensions: 48383 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 16 Length of query: 428 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 340 Effective length of database: 1,203,190 Effective search space: 409084600 Effective search space used: 409084600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)