BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0039.p
         (301 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA...   353   6e-99

>gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  353 bits (907), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 193/298 (64%), Positives = 222/298 (74%), Gaps = 1/298 (0%)

Query: 3   LPVAVHYTERRRRQRRQQVFCRELARMALRSLHQELTLYPKPGLVSPVDNGSHDDMTAAT 62
           L   +H  ++RR  R+   FCR+LAR+ALRSLHQEL LYPKPGLVS +DNGSHDDM A+T
Sbjct: 11  LAAPLHPLQQRRAVRQNLQFCRQLARLALRSLHQELVLYPKPGLVSLIDNGSHDDMDAST 70

Query: 63  FLRSLFSLRRYFSDIAAAGMAGASFSELKRLGIEAEQRMLKATGGVNTHRGAIFCLGMLC 122
           FLRSLFSLR YF  IA AG+ GA F  L++L I AE RML+ATGGVNTHRGAIF LGMLC
Sbjct: 71  FLRSLFSLRHYFFQIAVAGLKGAPFHHLQKLAIAAEARMLRATGGVNTHRGAIFALGMLC 130

Query: 123 AAIACCRSQEMTLSPQAIRATLLIRWGDALTGHTN-STSKTEETASHGLRVAARHAVGGA 181
           AA+A CR +++ L  + IRATLLI+WGDAL  H+           SHG  VA  HAVGGA
Sbjct: 131 AAMAYCRGRKLPLQAEVIRATLLIQWGDALARHSGVHLDHGAGQRSHGQSVALAHAVGGA 190

Query: 182 REEGALGFPSVFEIALPQLQATLAAGRDGHCAKTDALFALMAHVSDTNVYHRGGAAGAAL 241
           REEGALGFP+VFE+ALPQLQ+TL  GR  H A+ DALFALMAH+SDTNVYHRGGA GA  
Sbjct: 191 REEGALGFPAVFEVALPQLQSTLEQGRAPHEARIDALFALMAHISDTNVYHRGGAEGAQR 250

Query: 242 VQQRSREFLTCGGTADAAWLERAEAVHHEFVERRLSPGGAADLLAAACLIHTMCGGEL 299
           V+Q+S  FL  GGT    W  +A A HH+FV  RLSPGGAADLLAAACL+H     EL
Sbjct: 251 VRQQSAAFLAAGGTGAPGWRTQALACHHDFVAHRLSPGGAADLLAAACLVHQAMALEL 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,204
Number of extensions: 30779
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,217,395
Effective search space: 262957320
Effective search space used: 262957320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)