BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0038.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311992|ref|YP_003776084.1| phosphoribosyl-dephospho-CoA tr...   173   9e-45

>gi|300311992|ref|YP_003776084.1| phosphoribosyl-dephospho-CoA
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  173 bits (439), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 129/217 (59%), Gaps = 8/217 (3%)

Query: 8   STRHGLVWLNEAGWLEALACVADEHRFAV-QRWRQQDWPAVIRRRDAGCTAGEICLGIAL 66
           + RH L+WL EA W        D    AV  RWRQ  WP V+RR +A   A E+C GIAL
Sbjct: 4   APRHHLLWLTEAAWTRLQTQSQDSREQAVLARWRQMRWPVVVRRAEADAGADELCAGIAL 63

Query: 67  PPDQDGVKLRVPLRIDLQGVRAMRAPLAIADVIE---HAGSQ-WRDGLLELHGDIAAQGL 122
           PPD  G K R+ LR+    V A  AP  + D+     H   Q W+ G+  L   + A G+
Sbjct: 64  PPDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGI 123

Query: 123 EIGVYGSLALQALTGQSYLRSASDIDLLFSPLDRLQLEQGVSLLQQYAARLPLDGEISFP 182
            + V+GSL+ QA+T Q+Y+RS+SDIDLLF+P  + QL QG+ LL + AA LPLDGEI FP
Sbjct: 124 ALAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLARQAAMLPLDGEIVFP 183

Query: 183 SGYAVAWKEWAQACGKPGN---RVLVKHDSGVALQRV 216
            G AV+WKEW Q   K      RV+VK  + VAL+ V
Sbjct: 184 DGAAVSWKEWQQVMRKETKSDARVMVKRPAAVALEPV 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 838,925
Number of extensions: 37483
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)