BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0036.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311994|ref|YP_003776086.1| acetyl-CoA carboxylase beta sub...   430   e-122

>gi|300311994|ref|YP_003776086.1| acetyl-CoA carboxylase beta
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  430 bits (1105), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/295 (75%), Positives = 251/295 (85%), Gaps = 2/295 (0%)

Query: 1   LEANARERLAQVLDTGSFEEFLPPSKRIVSPHLGQLDAPVSFDDGVVVGRGALNGAKVFA 60
           LEA ARER+  VLD GSFEE LPP++R+VSPHLGQLDAPVSFDDGV++G G L+G  V A
Sbjct: 6   LEATARERILAVLDAGSFEELLPPAQRVVSPHLGQLDAPVSFDDGVIIGAGRLDGQAVMA 65

Query: 61  AAQEGGFMGGAVGEVHGAKLVGLLKRAVQEKAEGVILLLETGGVRLHEANAGLIAVSEVM 120
           AAQEGGFMGGAVGEVHGAKLVGLL+RAV ++A GVILLLETGGVRLHEANAGLIAVSEVM
Sbjct: 66  AAQEGGFMGGAVGEVHGAKLVGLLRRAVVKQAAGVILLLETGGVRLHEANAGLIAVSEVM 125

Query: 121 RAVLDTRAAGIPVIVLVGGSNGCFGGMGIVARCANAIIMSEEGRLAMSGPEVIETANGVE 180
           RAVL+TRAAGIPVIVLVGG+NGCFGGMGIVARCAN +IMSEEGRLAMSGPEVIETANGVE
Sbjct: 126 RAVLETRAAGIPVIVLVGGANGCFGGMGIVARCANTVIMSEEGRLAMSGPEVIETANGVE 185

Query: 181 EFDSRDRALVWRTTGGKHRYLLGDCHGIVADDTAAFREAATRTLQGFKNNPTALSLQALE 240
           EFDSRDRALVWRTTGGKHRYL+GDC  +V+DDTAAFR AA   L   + +   L+L ALE
Sbjct: 186 EFDSRDRALVWRTTGGKHRYLIGDCQQLVSDDTAAFRAAAIAALA--QVSAPQLTLAALE 243

Query: 241 IEQAMLEQRIARFGDAADPLEIWQRLGIDKPQDIAMLEAAAFTALAEPYRVKGQA 295
            EQ ML +RIA FG A DP++IW  LG+ +P  + MLEA AFTA+A+ +R+   A
Sbjct: 244 AEQEMLRRRIATFGLADDPMDIWAELGVPRPDSVPMLEADAFTAMAQAHRITSPA 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 955,019
Number of extensions: 43130
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)