BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0034.p
         (535 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311995|ref|YP_003776087.1| malonate decarboxylase alpha su...   667   0.0  

>gi|300311995|ref|YP_003776087.1| malonate decarboxylase alpha
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/455 (75%), Positives = 370/455 (81%), Gaps = 26/455 (5%)

Query: 1   MSATDRVWNRRQTNRNERLARASSVLGNSLEGKLLPAARIADLLYAVIESGDRVCLEGNN 60
           MS+++RVWN RQ NR +RLARA++VLG+ L+GK+ PA ++ADLLYAV+E+GDRVC+EGNN
Sbjct: 1   MSSSERVWNARQKNREQRLARATAVLGSQLQGKIAPADKLADLLYAVLENGDRVCVEGNN 60

Query: 61  QKQADFLSKALAGLDPARVHDLHMLFSVLALPEHLDVFEKGIASKLDFSFSGPQAGRLAK 120
           QKQADFL+K LA LDPARV+ LHMLFSVLALPEHLDVFEKGIA +LDFSFSGPQAGRLAK
Sbjct: 61  QKQADFLAKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAK 120

Query: 121 LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIVEAT 180
           LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAI EAT
Sbjct: 121 LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEAT 180

Query: 181 TFSSGIVIAQVNEIVDVLPRIDIPADWVSFVTKAPTPHYIEPLFTRDPAQISEIQVLMAM 240
            FSSGIVIAQVNEIVD LPR+DIPADWV F  KAPTPHYIEPLFTRDPAQISEIQVLMAM
Sbjct: 181 AFSSGIVIAQVNEIVDELPRVDIPADWVGFAIKAPTPHYIEPLFTRDPAQISEIQVLMAM 240

Query: 241 MAIKGIYAEYEVQRLNHGIGFDTAAIELILPTYGESLGLRGKICKHWALNPHPALIPAIE 300
           MAIKGIYAEY VQRLNHGIGFDTAAIELILPTY ESLGLRGKICKHWALNPHPALIPAIE
Sbjct: 241 MAIKGIYAEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIE 300

Query: 301 AGFVESVHSFGSELGMEDYIRARPDIFFIGPDGSMRSNRAFSQTAGHYACDMFIGLT--- 357
           AGFVESVHSFGSELGMEDYIRARPDIFF+GPDGSMRSNRAFSQTAGHY CDMFIG T   
Sbjct: 301 AGFVESVHSFGSELGMEDYIRARPDIFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQI 360

Query: 358 --HGRRRTRSPSRQPGVAQGGSAGPGRQEHHPARPEAGGTDRGDLPRTHAAGFRRPARRL 415
              G   T +  R  G   GG+            P  G   RG   R HA+     A + 
Sbjct: 361 DLQGNSSTATLGRIAGF--GGA------------PNMGADARG---RRHASEAWLKAGQQ 403

Query: 416 ATGRASQHADPAGDDLRRRRHAYPDRRRHRQPAAV 450
           A  RA +H  P G  L  +       R H QPA V
Sbjct: 404 A--RAGRHTIPRGQKLVVQ--TVETFREHMQPAFV 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,755,860
Number of extensions: 75665
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,193,720
Effective search space: 531205400
Effective search space used: 531205400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)