BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0030.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311999|ref|YP_003776091.1| GntR family transcription regul...   290   4e-80

>gi|300311999|ref|YP_003776091.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  290 bits (743), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 164/221 (74%), Gaps = 36/221 (16%)

Query: 1   MDTPKKRSETLRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIV 60
           MDTPK R+E LRESIEELIAV KL+PGQHLDET LAE+FGVSRTPIREALIQLASMGI+ 
Sbjct: 1   MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE 60

Query: 61  MRPRRGA------------------------------------YGSLMAAHQACKDARDA 84
           MRPRRGA                                    +  L+AAHQAC+ ARDA
Sbjct: 61  MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA 120

Query: 85  VDPDTYFYKNEDFHGQIYAGSHNAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEG 144
            DPD YFY NE FH  IYAGSHN FL +QAR L RRLRPYRRLQLRVRDRLK S+DEH+ 
Sbjct: 121 NDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180

Query: 145 VVNAIIAGDSERTVELLRQHVMIQGQRFADLVASLHQLKLA 185
           VV+AII+GD+E+TV+LLR+H+MIQGQRFADLVASLHQLK A
Sbjct: 181 VVDAIISGDAEKTVDLLREHIMIQGQRFADLVASLHQLKSA 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 532,767
Number of extensions: 18186
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)