BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0028.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phospha...   342   2e-95

>gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  342 bits (877), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/231 (72%), Positives = 189/231 (81%)

Query: 4   PLVFIDGDQGTTGLLIHDRLRDRSDLQLATLPAAERKDARRRAEAINACDIAILCLPDAA 63
           PL+FIDGDQGTTGL IH+RLR R DL++ TLPAAERKDA+RRAEAIN+ DIA+LCLPDAA
Sbjct: 5   PLIFIDGDQGTTGLQIHERLRARQDLRVLTLPAAERKDAQRRAEAINSADIALLCLPDAA 64

Query: 64  ARDAVAAIENPAVRVIDASSAHRTTAGWVYGFPEMDAGQARLIATASRVTNPGCYPTGAI 123
           AR+AVA I NP VRVIDASSAHRT+  WVYGFPEM AGQA  IATA RV+NPGCYPTGAI
Sbjct: 65  AREAVAMISNPRVRVIDASSAHRTSPDWVYGFPEMAAGQAEAIATALRVSNPGCYPTGAI 124

Query: 124 SLLRPLIEAGLVPRDYPASVHAVSGYSGGGRPSVEQYEGPQGAQAPAFQLYGTALSHKHP 183
           +LLRPL++AGLVP DYP ++HAVSGYSGGGR  VEQYEG + A A  F  YG  L HKHP
Sbjct: 125 ALLRPLVQAGLVPADYPLNIHAVSGYSGGGRAQVEQYEGAEAAHAAPFVTYGLGLQHKHP 184

Query: 184 PEMQRYTGLDHRPIFVPAYGAFRQGIVLTIPLELRLLAAGXKLCRRRACTR 234
           PEMQ + GL  RP+FVP+YGAFRQGIVLTI L+ RLL A   L R RA  +
Sbjct: 185 PEMQLHAGLSQRPLFVPSYGAFRQGIVLTIALQSRLLPAQASLERLRATLQ 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,865
Number of extensions: 34940
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)